Mercurial > repos > bornea > saint_interactions

comparison ProteinInteractions_v2.xml @ 18:d94c79ddb31a draft default tip

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author bornea
date Fri, 29 Jan 2016 15:46:29 -0500
parents f8ef6b24862b
children
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17:41286262976c 18:d94c79ddb31a
16 </inputs> 16 </inputs>
17 <outputs> 17 <outputs>
18 <data format="sif" name="Cytoscape_File" label="Cytoscape File"/> 18 <data format="sif" name="Cytoscape_File" label="Cytoscape File"/>
19 </outputs> 19 </outputs>
20 <stdio> 20 <stdio>
21 <regex match="error" 21 <regex match="Error|error"
22 source="stdout" 22 source="stdout"
23 level="fatal" 23 level="fatal"
24 description="Unknown error"/> 24 description="Unknown error"/>
25 <regex match="Error|error"
26 source="stderr"
27 level="fatal"
28 description="Unknown error"/>
29 <regex match="Error: bad bait"
30 source="stdout"
31 level="fatal"
32 description="Error: bad bait"/>
25 </stdio> 33 </stdio>
26 34
27 <tests> 35 <tests>
28 <test> 36 <test>
29 <param name="input" value="fa_gc_content_input.fa"/> 37 <param name="input" value="fa_gc_content_input.fa"/>
45 * low: no filtering 53 * low: no filtering
46 * medium: >0.5 54 * medium: >0.5
47 * high: >0.7 55 * high: >0.7
48 * very high: >0.9 56 * very high: >0.9
49 57
50 4) Species: Human, Yeast, or Mouse. 58 Species: Human, Yeast, or Mouse.
51 59
52 </help> 60 </help>
53 </tool> 61 </tool>