Mercurial > repos > bornea > saint_preproc

comparison SAINT_preprocessing_v6.py @ 13:13383ba55336 draft

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author bornea
date Tue, 17 Nov 2015 10:32:56 -0500
parents 30d53a378141
children 40c88c39f8d7
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12:ed33c5e621b7 13:13383ba55336
20 prey = sys.argv[2] # Y or N 20 prey = sys.argv[2] # Y or N
21 fasta_db = sys.argv[3] 21 fasta_db = sys.argv[3]
22 tool_path = sys.argv[8] 22 tool_path = sys.argv[8]
23 if fasta_db == "None": 23 if fasta_db == "None":
24 fasta_db = str(tool_path) + "/SwissProt_HUMAN_2014_08.fasta" 24 fasta_db = str(tool_path) + "/SwissProt_HUMAN_2014_08.fasta"
25 make_bait= sys.argv[5] 25 make_bait= sys.argv[6]
26 26
27 27
28 baits = make_bait.split() 28 baits = make_bait.split()
29 print baits
29 i = 0 30 i = 0
30 bait_file_tmp = open("bait.txt", "wr") 31 bait_file_tmp = open("bait.txt", "wr")
31 order = [] 32 order = []
32 bait_cache = [] 33 bait_cache = []
33 34