Mercurial > repos > bornea > saint_preprocessing

comparison mzID_process2.py @ 78:211fd8ae6edc draft

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author bornea
date Thu, 02 Mar 2017 16:03:07 -0500
parents 50391fdc229a
children
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77:4ea4e1ea75b5 78:211fd8ae6edc
140 bait_bool = sys.argv[7] 140 bait_bool = sys.argv[7]
141 prey_file = sys.argv[8] 141 prey_file = sys.argv[8]
142 bait_out = sys.argv[9] 142 bait_out = sys.argv[9]
143 inter_out = sys.argv[10] 143 inter_out = sys.argv[10]
144 144
145 def bait_create(baits, infile): 145 def bait_create(baits):
146 # Verifies the Baits are valid in the Scaffold file and writes the Bait.txt. 146 # Verifies the Baits are valid in the Scaffold file and writes the Bait.txt.
147 baits = make_bait.split() 147 baits = make_bait.split()
148 i = 0 148 i = 0
149 bait_file_tmp = open("bait.txt", "w") 149 bait_file_tmp = open("bait.txt", "w")
150 order = [] 150 order = []