Mercurial > repos > bornea > saint_preprocessing

comparison SAINT_preprocessing.xml @ 59:5ad68d3a11cc draft

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Uploaded
author bornea
date Sat, 27 Aug 2016 21:13:21 -0400
parents 340cc5988c31
children 3c0ed536029e
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58:4f843e0c6c40 59:5ad68d3a11cc
52 <repeat name="bait" title="Bait Create"> 52 <repeat name="bait" title="Bait Create">
53 <param name="bait1" type="text" size="100" label="Bait"/> 53 <param name="bait1" type="text" size="100" label="Bait"/>
54 <param name="assign" type="text" size="100" label="Group Assignment"/> 54 <param name="assign" type="text" size="100" label="Group Assignment"/>
55 <param name="T_C" type="boolean" checked="true" label="Is this a Control?"/> 55 <param name="T_C" type="boolean" checked="true" label="Is this a Control?"/>
56 </repeat> 56 </repeat>
57 </when>
57 <when value="Scaffold"> 58 <when value="Scaffold">
58 <param format="dat" name="input" type="data" label="Scaffold Output"/> 59 <param format="dat" name="input" type="data" label="Scaffold Output"/>
59 <param type="boolean" name="preybool" checked="true" label="Create Prey File"/> 60 <param type="boolean" name="preybool" checked="true" label="Create Prey File"/>
60 <param type="data" name="fasta_db" format="fasta" label="Provide Uniprot Fasta database" optional="true"/> 61 <param type="data" name="fasta_db" format="fasta" label="Provide Uniprot Fasta database" optional="true"/>
61 <param name="bait_bool" type="boolean" checked="true" label="Are You Providing Your Own bait file?"/> 62 <param name="bait_bool" type="boolean" checked="true" label="Are You Providing Your Own bait file?"/>
179 to the **Bait Create** tool. 180 to the **Bait Create** tool.
180 181
181 **Note:** Individual bait names must match to the sample names 182 **Note:** Individual bait names must match to the sample names
182 within your Scaffold or MaxQuant output exactly and must contain no 183 within your Scaffold or MaxQuant output exactly and must contain no
183 whitespace characters (e.g. spaces) or dashes. 184 whitespace characters (e.g. spaces) or dashes.
184 185
185 **Note:** When using Peptideshaker output the baits in the baitfile 186 **Note:** When using Peptideshaker output the baits in the baitfile
186 need to be in the same order as the files selected. 187 need to be in the same order as the files selected.
187 188
188 **7) Bait Create** 189 **7) Bait Create**
189 190