Mercurial > repos > bornea > saint_preprocessing

comparison SAINT_preprocessing_mq_pep.py @ 46:5b2a60b59f46 draft

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Uploaded
author bornea
date Thu, 19 May 2016 10:59:04 -0400
parents 0eae5a2c37d4
children 8ca1d3bc5906
comparison
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45:0eae5a2c37d4 46:5b2a60b59f46
267 print valid_prots 267 print valid_prots
268 with open('inter.txt', 'w') as input_file: 268 with open('inter.txt', 'w') as input_file:
269 l = 0; a = 0 269 l = 0; a = 0
270 for bb in bait: 270 for bb in bait:
271 for lst in data: 271 for lst in data:
272 if valid_prots[a] not in errors: 272 if lst[0] in valid_prots:
273 print lst 273 input_file.write(header[bait_index[l]] + '\t' + bb[1] + '\t' + lst[0] + '\t' + lst[bait_index[l]] + '\n')
274 print l
275 print a
276 input_file.write(header[bait_index[l]] + '\t' + bb[1] + '\t' + valid_prots[a] + '\t' + lst[bait_index[l]] + '\n')
277 print(header[bait_index[l]] + '\t' + bb[1] + '\t' + valid_prots[a] + '\t' + lst[bait_index[l]] + '\n')
278 a += 1 274 a += 1
279 if a == len(valid_prots): 275 if a == len(valid_prots):
280 l += 1; a = 0 276 l += 1; a = 0
281 277
282 278