Mercurial > repos > bornea > saint_preprocessing

comparison SAINT_preprocessing.py @ 49:6bb30aeb02bd draft

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Uploaded
author bornea
date Thu, 19 May 2016 12:03:16 -0400
parents 265f5ae47a56
children 61b792d17660
comparison
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48:265f5ae47a56 49:6bb30aeb02bd
236 output_file.close() 236 output_file.close()
237 237
238 238
239 def no_error_inter(Scaffold_input): 239 def no_error_inter(Scaffold_input):
240 # Remake inter file without protein errors from Uniprot. 240 # Remake inter file without protein errors from Uniprot.
241 err = readtab("./error_proteins.txt") 241 err = readtab("error proteins.txt")
242 bait = readtab(baitfile) 242 bait = readtab(baitfile)
243 data = read_Scaffold(Scaffold_input).data 243 data = read_Scaffold(Scaffold_input).data
244 header = read_Scaffold(Scaffold_input).header 244 header = read_Scaffold(Scaffold_input).header
245 header = [MQ_var.replace(r"\"", "") for MQ_var in header] 245 header = [MQ_var.replace(r"\"", "") for MQ_var in header]
246 header = [MQ_var.replace(r"Intensity.", r"") for MQ_var in header] 246 header = [MQ_var.replace(r"Intensity.", r"") for MQ_var in header]