Mercurial > repos > bornea > saint_preprocessing

comparison SAINT_preprocessing_mq_pep.py @ 47:8ca1d3bc5906 draft

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Uploaded
author bornea
date Thu, 19 May 2016 11:54:41 -0400
parents 5b2a60b59f46
children 0f5028e0c39c
comparison
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46:5b2a60b59f46 47:8ca1d3bc5906
270 for bb in bait: 270 for bb in bait:
271 for lst in data: 271 for lst in data:
272 if lst[0] in valid_prots: 272 if lst[0] in valid_prots:
273 input_file.write(header[bait_index[l]] + '\t' + bb[1] + '\t' + lst[0] + '\t' + lst[bait_index[l]] + '\n') 273 input_file.write(header[bait_index[l]] + '\t' + bb[1] + '\t' + lst[0] + '\t' + lst[bait_index[l]] + '\n')
274 a += 1 274 a += 1
275 if a == len(valid_prots): 275 if a == len(proteins):
276 l += 1; a = 0 276 l += 1; a = 0
277 277
278 278
279 def bait_check(bait, MaxQuant_input): 279 def bait_check(bait, MaxQuant_input):
280 # Check that bait names share header titles. 280 # Check that bait names share header titles.