Mercurial > repos > bornea > saint_preprocessing

comparison SAINT_preprocessing.xml @ 25:9a110e634afe draft

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author bornea
date Mon, 18 Apr 2016 10:21:10 -0400
parents 85c19ee579d6
children f2102787b4ff
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24:85c19ee579d6 25:9a110e634afe
70 <output name="out_file1" file="fa_gc_content_output.txt"/> 70 <output name="out_file1" file="fa_gc_content_output.txt"/>
71 </test> 71 </test>
72 </tests> 72 </tests>
73 <help> 73 <help>
74 Pre-Processing 74 Pre-Processing
75 -------------- 75 ^^^^^^^^^^^^^^
76
77 --------------
78 76
79 This tool will read in a Scaffold *Samples Report* file (tab-delimited 77 This tool will read in a Scaffold *Samples Report* file (tab-delimited
80 txt file) or a MaxQuant *peptides.txt* file and process them to generate 78 txt file) or a MaxQuant *peptides.txt* file and process them to generate
81 a *Bait File, Prey File,* and *Inter File* for SAINTexpress analysis. 79 a *Bait File, Prey File,* and *Inter File* for SAINTexpress analysis.
80
81 --------------
82 82
83 1) MaxQuant or Scaffold 83 1) MaxQuant or Scaffold
84 ^^^^^^^^^^^^^^^^^^^^^^^ 84 ^^^^^^^^^^^^^^^^^^^^^^^
85 85
86 APOSTL is able to recognize either a Scaffold *Samples Report* file 86 APOSTL is able to recognize either a Scaffold *Samples Report* file