Mercurial > repos > bornea > saint_preprocessing

comparison SAINT_preprocessing.xml @ 64:e382e24af909 draft

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author bornea
date Sat, 27 Aug 2016 22:13:10 -0400
parents 1972ccdbeb16
children a51c0e6d7d99
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63:1972ccdbeb16 64:e382e24af909
30 ${ba.T_C} 30 ${ba.T_C}
31 #end for 31 #end for
32 " 32 "
33 \$INSTALL_RUN_PATH/ $type_select.bait_bool $type_select.bait_file_in $Inter_file $Prey_file 33 \$INSTALL_RUN_PATH/ $type_select.bait_bool $type_select.bait_file_in $Inter_file $Prey_file
34 #elif (str($type_select.type) == 'mzIdentML'): 34 #elif (str($type_select.type) == 'mzIdentML'):
35 Protein_report_processing.py "$type_select.input" $type_select.bait_file_in $type_select.preybool $type_select.fasta_db \$INSTALL_RUN_PATH/ 35 mzID_process2.py "$type_select.input" $type_select.bait_file_in $type_select.preybool $type_select.fasta_db \$INSTALL_RUN_PATH/
36 " 36 "
37 #for $ba in $bait 37 #for $ba in $bait
38 ${ba.bait1} 38 ${ba.bait1}
39 ${ba.assign} 39 ${ba.assign}
40 ${ba.T_C} 40 ${ba.T_C}