Mercurial > repos > bornea > saint_preprocessing

diff mzID_process2.py @ 73:50391fdc229a draft

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Uploaded
author bornea
date Sat, 27 Aug 2016 23:37:08 -0400
parents 5ec0b997fb13
children 211fd8ae6edc
line wrap: on
line diff
--- a/mzID_process2.py	Sat Aug 27 23:26:10 2016 -0400
+++ b/mzID_process2.py	Sat Aug 27 23:37:08 2016 -0400
@@ -184,14 +184,12 @@
 	os.system(cmd)
 	mzIdentML = read_tab("flat_mzIdentML.txt")
 	inter = inter + make_inter(mzIdentML,bait[cnt][0],bait[cnt][1]).inter
-	print inter
 	accessions.append(make_inter(mzIdentML,bait[cnt][0],bait[cnt][1]).accessions)
-	print accessions
 	cnt+=1
 
 with open("inter.txt","w") as x:
 	x.write(inter)
-if make_prey == "Y":
+if make_prey == "true":
 	unique_accessions = []
 	prey = ""
 	for i in accessions: