Mercurial > repos > bornea > saint_preprocessing

diff mzID_process2.py @ 68:a48ac530e4fe draft

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author bornea
date Sat, 27 Aug 2016 22:56:13 -0400
parents b8169cc0b860
children f6fbe5d6a94f
line wrap: on
line diff
--- a/mzID_process2.py	Sat Aug 27 22:40:09 2016 -0400
+++ b/mzID_process2.py	Sat Aug 27 22:56:13 2016 -0400
@@ -131,7 +131,7 @@
 
 files = sys.argv[1]
 file_list = files.split(",")
-bait = read_tab(sys.argv[2])
+
 make_prey = sys.argv[3]
 db = sys.argv[4]
 if db == "None":
@@ -174,6 +174,7 @@
         bait_file_tmp.write(cache_line)
     bait_file_tmp.close()
     bait = "bait.txt"
+bait = read_tab("bait.txt")
 
 inter = ""
 cnt = 0