# HG changeset patch # User bornea # Date 1460669025 14400 # Node ID 9329d9ec60b042cb5f7308f8b4498f5a37838574 # Parent 2c991a36347aed39cec827c27ac48ccc9c07ab69 Deleted selected files diff -r 2c991a36347a -r 9329d9ec60b0 ProHits_DotPlot_Generator.xml --- a/ProHits_DotPlot_Generator.xml Thu Apr 14 16:51:07 2016 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,66 +0,0 @@ - - - ProHits_DotPlot_Generator.py $saint_file $FDR1 $FDR2 $spec_max $dotplot $heatmap $estimated $stats \$INSTALL_RUN_PATH/ - - INSTALL_RUN_PATH - - - - - - - - - - - - - - - - - - - - - - - - - - - -**Running ProHits DotPlot** - -This runs the biclustering version of the DotPlot tool found at http://prohitstools.mshri.on.ca/. A more interactive version can be found at http://prohits-viz.lunenfeld.ca/. This script will take a long time to run. - -INPUTS: - -Saint Output: SAINTexpress generated "list.txt" file. - -Primary False Discovery Rate - -Secondary False Discovery Rate - -Maximum Spectral Count - ------- - -**Please cite** - - * Knight, J.D., Liu, G., Zhang, J., Pasculescu, A., Choi, H., and Gingras, A.-C. (2014) A web-tool for visualizing quantitative protein-protein interaction data. Proteomics, in press. PMID:25422071. - - - \ No newline at end of file