Mercurial > repos > bornea > saint_preprocessing_peptideshaker

comparison Protein_report_processing.xml @ 11:6d61b698125d draft

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Uploaded
author bornea
date Tue, 23 Aug 2016 19:26:29 -0400
parents 41d81e97186d
children ad33728cecc0
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10:9ec349fd0e66 11:6d61b698125d
14 <requirement type="set_environment">INSTALL_RUN_PATH</requirement> 14 <requirement type="set_environment">INSTALL_RUN_PATH</requirement>
15 </requirements> 15 </requirements>
16 <inputs> 16 <inputs>
17 <param format="dat" name="input" type="data" label="Scaffold or MaxQuant peptides Output" multiple="true"/> 17 <param format="dat" name="input" type="data" label="Scaffold or MaxQuant peptides Output" multiple="true"/>
18 <param type="select" name="use_metric" label="Select Report File Value for Qunatification"> 18 <param type="select" name="use_metric" label="Select Report File Value for Qunatification">
19 <option value="#Validated Peptides">#Validated Peptides</option> 19 <option value="Validated_Peptides">#Validated Peptides</option>
20 <option value="#Peptides">#Peptides</option> 20 <option value="Peptides">#Peptides</option>
21 <option value="#Unique">#Unique</option> 21 <option value="Unique">#Unique</option>
22 <option value="#Validated PSMs">#Validated PSMs</option> 22 <option value="Validated_PSMs">#Validated PSMs</option>
23 <option value="#PSMs">#PSMs</option> 23 <option value="PSMs">#PSMs</option>
24 </param> 24 </param>
25 <param type="boolean" name="preybool" checked="true" label="Create Prey File"/> 25 <param type="boolean" name="preybool" checked="true" label="Create Prey File"/>
26 <param type="data" name="fasta_db" format="fasta" label="Provide Uniprot Fasta database" optional="true"/> 26 <param type="data" name="fasta_db" format="fasta" label="Provide Uniprot Fasta database" optional="true"/>
27 <param name="bait_bool" type="boolean" checked="true" label="Are You Providing Your Own bait file?"/> 27 <param name="bait_bool" type="boolean" checked="true" label="Are You Providing Your Own bait file?"/>
28 <param type="data" format="dat" name="bait_file_in" label="Bait File" optional="true"/> 28 <param type="data" format="dat" name="bait_file_in" label="Bait File" optional="true"/>