Mercurial > repos > bornea > saint_preprocessing_peptideshaker

comparison Protein_report_processing.py @ 10:9ec349fd0e66 draft

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Uploaded
author bornea
date Tue, 23 Aug 2016 19:26:13 -0400
parents e01bdd338210
children fcacb3f20451
comparison
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9:e01bdd338210 10:9ec349fd0e66
173 if len(master_table[0]) < len(master_table[1]): 173 if len(master_table[0]) < len(master_table[1]):
174 master_table[0] = ["#"] + master_table[0] 174 master_table[0] = ["#"] + master_table[0]
175 replicate_index = master_table[0].index("Replicate") 175 replicate_index = master_table[0].index("Replicate")
176 grouping_index = master_table[0].index("Bait_Grouping") 176 grouping_index = master_table[0].index("Bait_Grouping")
177 accession_index = master_table[0].index("Main Accession") 177 accession_index = master_table[0].index("Main Accession")
178 quant_type = quant_type.replace("_", " ")
179 quant_type = r"#" + quant_type
178 Quant_index = master_table[0].index(quant_type) 180 Quant_index = master_table[0].index(quant_type)
179 inter_file = "" 181 inter_file = ""
180 for i in master_table[1:]: 182 for i in master_table[1:]:
181 line = [] 183 line = []
182 line.append(i[replicate_index]) 184 line.append(i[replicate_index])