Mercurial > repos > bornea > saint_tool
annotate tool_dependencies.xml @ 1:d963be0ebf53 draft
Uploaded
| author | bornea |
|---|---|
| date | Tue, 10 Nov 2015 11:39:43 -0500 |
| parents | |
| children |
| rev | line source |
|---|---|
| 1 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 3 <set_environment version="1.0"> | |
| 4 <environment_variable name="R_SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR/bubblebeam</environment_variable> | |
| 5 </set_environment> | |
| 6 <package name="R" version="2.15.1"> | |
| 7 <install version="1.0"> | |
| 8 <actions> | |
| 9 <action type="shell_command">git clone http://github.com/bornea/Saint_On_Galaxy</action> | |
| 10 <action type="shell_command">unzip SAINTexpress_v3.6.1__2015-05-03.zip</action> | |
| 11 <action type="shell_command">./make -j</action> | |
| 12 <action type="set_environment"> | |
| 13 <environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR/Saint_On_Galaxy/SAINTexpress_v3.6.1__2015-05-03/bin</environment_variable> | |
| 14 </action> | |
| 15 </actions> | |
| 16 </install> | |
| 17 <readme></readme> | |
| 18 </package> | |
| 19 </tool_dependency> |