Mercurial > repos > bornea > saint_tool
comparison saint_wrapper.py @ 34:d525ea266d8a draft
Uploaded
author | bornea |
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date | Thu, 28 Jan 2016 16:41:02 -0500 |
parents | bec1c735fe96 |
children | 409b4e31c3d1 |
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33:bec1c735fe96 | 34:d525ea266d8a |
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39 ins_path = sys.argv[10] | 39 ins_path = sys.argv[10] |
40 | 40 |
41 | 41 |
42 def first_run_check(): | 42 def first_run_check(): |
43 dirs_list = [] | 43 dirs_list = [] |
44 for (dirpath, dirnames, filename) in os.walk(ins_path): | 44 for (dirpath, dirnames, filename) in os.walk(str(ins_path)): |
45 dirs_list.extend(dirnames) | 45 dirs_list.extend(dirnames) |
46 break | 46 break |
47 if r"SAINTexpress_v3.6.1__2015-05-03" in dirs_list: | 47 if r"SAINTexpress_v3.6.1__2015-05-03" in dirs_list: |
48 pass | 48 pass |
49 else: | 49 else: |
50 cmd = r"unzip SAINTexpress_v3.6.1__2015-05-03.zip" | 50 cmd = r"unzip SAINTexpress_v3.6.1__2015-05-03.zip" |
51 os.system(cmd) | 51 os.system(cmd) |
52 os.chdir("./SAINTexpress_v3.6.1__2015-05-03") | 52 os.chdir(str(ins_path) + "/SAINTexpress_v3.6.1__2015-05-03") |
53 cmd1 = r"make -j" | 53 cmd1 = r"make -j" |
54 os.system(cmd1) | 54 os.system(cmd1) |
55 | 55 |
56 | 56 |
57 def default_run(inter_file1, prey_file1, bait_file1, output_file1, num_of_rep1): | 57 def default_run(inter_file1, prey_file1, bait_file1, output_file1, num_of_rep1): |