Mercurial > repos > bornea > saint_tool

comparison tool_dependencies.xml @ 1:d963be0ebf53 draft

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author bornea
date Tue, 10 Nov 2015 11:39:43 -0500
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0:333b4c487fc3 1:d963be0ebf53
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <set_environment version="1.0">
4 <environment_variable name="R_SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR/bubblebeam</environment_variable>
5 </set_environment>
6 <package name="R" version="2.15.1">
7 <install version="1.0">
8 <actions>
9 <action type="shell_command">git clone http://github.com/bornea/Saint_On_Galaxy</action>
10 <action type="shell_command">unzip SAINTexpress_v3.6.1__2015-05-03.zip</action>
11 <action type="shell_command">./make -j</action>
12 <action type="set_environment">
13 <environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR/Saint_On_Galaxy/SAINTexpress_v3.6.1__2015-05-03/bin</environment_variable>
14 </action>
15 </actions>
16 </install>
17 <readme></readme>
18 </package>
19 </tool_dependency>