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view tool_dependencies.xml @ 1:d963be0ebf53 draft

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author bornea
date Tue, 10 Nov 2015 11:39:43 -0500
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<?xml version="1.0"?>
<tool_dependency>
    <set_environment version="1.0">
        <environment_variable name="R_SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR/bubblebeam</environment_variable>   
    </set_environment>
    <package name="R" version="2.15.1">
        <install version="1.0">
            <actions>
                <action type="shell_command">git clone http://github.com/bornea/Saint_On_Galaxy</action>
                <action type="shell_command">unzip SAINTexpress_v3.6.1__2015-05-03.zip</action>
                <action type="shell_command">./make -j</action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR/Saint_On_Galaxy/SAINTexpress_v3.6.1__2015-05-03/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme></readme>
    </package>
</tool_dependency>