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comparison bam_to_bigwig/README.txt @ 4:14e5258d1b39

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v0.1.1: Add the forgotten --split argument in XML and moves to using the new bedtools. Thanks to David Leader
author Brad Chapman <chapmanb@50mail.com>
date Tue, 11 Feb 2014 15:55:22 -0500
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3:294e9dae5a9b 4:14e5258d1b39
4 region. This allows you to view regions of arbitrarily large Wiggle file data 4 region. This allows you to view regions of arbitrarily large Wiggle file data
5 at UCSC while avoiding the upload costs. 5 at UCSC while avoiding the upload costs.
6 6
7 History 7 History
8 ------- 8 -------
9
10 v0.1.1 passes the forgotten split argument and moves to using the new
11 sub-command enabled bedtools. Thanks to David Leader.
9 12
10 As of v0.1.0, the Galaxy tools uses a revised bam_to_bigwig.py script using 13 As of v0.1.0, the Galaxy tools uses a revised bam_to_bigwig.py script using
11 genomeCoverageBed and bedGraphToBigWig - this approach allows gaps/skpis to 14 genomeCoverageBed and bedGraphToBigWig - this approach allows gaps/skpis to
12 be excluded from the coverage calculation, which is important for RNA-Seq. 15 be excluded from the coverage calculation, which is important for RNA-Seq.
13 16