srnapipe: lib/sRNAPipe/js/jquery.galleriffic.js annotate

annotate lib/sRNAPipe/js/jquery.galleriffic.js @ 65:0e9adbd82bb4 draft

planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit a623ac00600191204ede63c45862a7fbb561afd2

author	brasset_jensen
date	Wed, 30 Jan 2019 02:41:24 -0500
parents	967512924317
children

rev	line source
64 967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	1 /**
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	2 * jQuery Galleriffic plugin
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	3 *
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	4 * Copyright (c) 2008 Trent Foley (http://trentacular.com)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	5 * Licensed under the MIT License:
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	6 * http://www.opensource.org/licenses/mit-license.php
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	7 *
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	8 * Much thanks to primary contributer Ponticlaro (http://www.ponticlaro.com)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	9 */
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	10 ;(function($) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	11 // Globally keep track of all images by their unique hash. Each item is an image data object.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	12 var allImages = {};
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	13 var imageCounter = 0;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	14
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	15 // Galleriffic static class
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	16 $.galleriffic = {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	17 version: '2.0.1',
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	18
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	19 // Strips invalid characters and any leading # characters
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	20 normalizeHash: function(hash) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	21 return hash.replace(/^.#/, '').replace(/\?.$/, '');
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	22 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	23
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	24 getImage: function(hash) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	25 if (!hash)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	26 return undefined;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	27
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	28 hash = $.galleriffic.normalizeHash(hash);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	29 return allImages[hash];
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	30 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	31
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	32 // Global function that looks up an image by its hash and displays the image.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	33 // Returns false when an image is not found for the specified hash.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	34 // @param {String} hash This is the unique hash value assigned to an image.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	35 gotoImage: function(hash) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	36 var imageData = $.galleriffic.getImage(hash);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	37 if (!imageData)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	38 return false;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	39
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	40 var gallery = imageData.gallery;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	41 gallery.gotoImage(imageData);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	42
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	43 return true;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	44 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	45
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	46 // Removes an image from its respective gallery by its hash.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	47 // Returns false when an image is not found for the specified hash or the
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	48 // specified owner gallery does match the located images gallery.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	49 // @param {String} hash This is the unique hash value assigned to an image.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	50 // @param {Object} ownerGallery (Optional) When supplied, the located images
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	51 // gallery is verified to be the same as the specified owning gallery before
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	52 // performing the remove operation.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	53 removeImageByHash: function(hash, ownerGallery) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	54 var imageData = $.galleriffic.getImage(hash);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	55 if (!imageData)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	56 return false;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	57
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	58 var gallery = imageData.gallery;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	59 if (ownerGallery && ownerGallery != gallery)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	60 return false;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	61
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	62 return gallery.removeImageByIndex(imageData.index);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	63 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	64 };
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	65
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	66 var defaults = {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	67 delay: 3000,
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	68 numThumbs: 20,
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	69 preloadAhead: 40, // Set to -1 to preload all images
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	70 enableTopPager: false,
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	71 enableBottomPager: true,
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	72 maxPagesToShow: 7,
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	73 imageContainerSel: '',
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	74 captionContainerSel: '',
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	75 controlsContainerSel: '',
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	76 loadingContainerSel: '',
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	77 renderSSControls: true,
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	78 renderNavControls: true,
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	79 playLinkText: 'Play',
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	80 pauseLinkText: 'Pause',
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	81 prevLinkText: 'Previous',
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	82 nextLinkText: 'Next',
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	83 nextPageLinkText: 'Next &rsaquo;',
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	84 prevPageLinkText: '&lsaquo; Prev',
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	85 enableHistory: false,
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	86 enableKeyboardNavigation: true,
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	87 autoStart: false,
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	88 syncTransitions: false,
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	89 defaultTransitionDuration: 1000,
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	90 onSlideChange: undefined, // accepts a delegate like such: function(prevIndex, nextIndex) { ... }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	91 onTransitionOut: undefined, // accepts a delegate like such: function(slide, caption, isSync, callback) { ... }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	92 onTransitionIn: undefined, // accepts a delegate like such: function(slide, caption, isSync) { ... }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	93 onPageTransitionOut: undefined, // accepts a delegate like such: function(callback) { ... }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	94 onPageTransitionIn: undefined, // accepts a delegate like such: function() { ... }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	95 onImageAdded: undefined, // accepts a delegate like such: function(imageData, $li) { ... }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	96 onImageRemoved: undefined // accepts a delegate like such: function(imageData, $li) { ... }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	97 };
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	98
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	99 // Primary Galleriffic initialization function that should be called on the thumbnail container.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	100 $.fn.galleriffic = function(settings) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	101 // Extend Gallery Object
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	102 $.extend(this, {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	103 // Returns the version of the script
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	104 version: $.galleriffic.version,
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	105
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	106 // Current state of the slideshow
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	107 isSlideshowRunning: false,
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	108 slideshowTimeout: undefined,
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	109
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	110 // This function is attached to the click event of generated hyperlinks within the gallery
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	111 clickHandler: function(e, link) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	112 this.pause();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	113
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	114 if (!this.enableHistory) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	115 // The href attribute holds the unique hash for an image
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	116 var hash = $.galleriffic.normalizeHash($(link).attr('href'));
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	117 $.galleriffic.gotoImage(hash);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	118 e.preventDefault();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	119 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	120 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	121
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	122 // Appends an image to the end of the set of images. Argument listItem can be either a jQuery DOM element or arbitrary html.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	123 // @param listItem Either a jQuery object or a string of html of the list item that is to be added to the gallery.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	124 appendImage: function(listItem) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	125 this.addImage(listItem, false, false);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	126 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	127 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	128
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	129 // Inserts an image into the set of images. Argument listItem can be either a jQuery DOM element or arbitrary html.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	130 // @param listItem Either a jQuery object or a string of html of the list item that is to be added to the gallery.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	131 // @param {Integer} position The index within the gallery where the item shouold be added.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	132 insertImage: function(listItem, position) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	133 this.addImage(listItem, false, true, position);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	134 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	135 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	136
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	137 // Adds an image to the gallery and optionally inserts/appends it to the DOM (thumbExists)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	138 // @param listItem Either a jQuery object or a string of html of the list item that is to be added to the gallery.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	139 // @param {Boolean} thumbExists Specifies whether the thumbnail already exists in the DOM or if it needs to be added.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	140 // @param {Boolean} insert Specifies whether the the image is appended to the end or inserted into the gallery.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	141 // @param {Integer} position The index within the gallery where the item shouold be added.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	142 addImage: function(listItem, thumbExists, insert, position) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	143 var $li = ( typeof listItem === "string" ) ? $(listItem) : listItem;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	144 var $aThumb = $li.find('a.thumb');
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	145 var slideUrl = $aThumb.attr('href');
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	146 var title = $aThumb.attr('title');
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	147 var $caption = $li.find('.caption').remove();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	148 var hash = $aThumb.attr('name');
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	149
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	150 // Increment the image counter
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	151 imageCounter++;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	152
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	153 // Autogenerate a hash value if none is present or if it is a duplicate
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	154 if (!hash \|\| allImages[''+hash]) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	155 hash = imageCounter;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	156 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	157
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	158 // Set position to end when not specified
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	159 if (!insert)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	160 position = this.data.length;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	161
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	162 var imageData = {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	163 title:title,
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	164 slideUrl:slideUrl,
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	165 caption:$caption,
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	166 hash:hash,
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	167 gallery:this,
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	168 index:position
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	169 };
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	170
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	171 // Add the imageData to this gallery's array of images
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	172 if (insert) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	173 this.data.splice(position, 0, imageData);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	174
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	175 // Reset index value on all imageData objects
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	176 this.updateIndices(position);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	177 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	178 else {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	179 this.data.push(imageData);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	180 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	181
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	182 var gallery = this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	183
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	184 // Add the element to the DOM
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	185 if (!thumbExists) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	186 // Update thumbs passing in addition post transition out handler
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	187 this.updateThumbs(function() {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	188 var $thumbsUl = gallery.find('ul.thumbs');
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	189 if (insert)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	190 $thumbsUl.children(':eq('+position+')').before($li);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	191 else
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	192 $thumbsUl.append($li);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	193
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	194 if (gallery.onImageAdded)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	195 gallery.onImageAdded(imageData, $li);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	196 });
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	197 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	198
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	199 // Register the image globally
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	200 allImages[''+hash] = imageData;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	201
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	202 // Setup attributes and click handler
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	203 $aThumb.attr('rel', 'history')
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	204 .attr('href', '#'+hash)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	205 .removeAttr('name')
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	206 .click(function(e) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	207 gallery.clickHandler(e, this);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	208 });
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	209
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	210 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	211 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	212
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	213 // Removes an image from the gallery based on its index.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	214 // Returns false when the index is out of range.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	215 removeImageByIndex: function(index) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	216 if (index < 0 \|\| index >= this.data.length)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	217 return false;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	218
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	219 var imageData = this.data[index];
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	220 if (!imageData)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	221 return false;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	222
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	223 this.removeImage(imageData);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	224
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	225 return true;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	226 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	227
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	228 // Convenience method that simply calls the global removeImageByHash method.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	229 removeImageByHash: function(hash) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	230 return $.galleriffic.removeImageByHash(hash, this);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	231 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	232
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	233 // Removes an image from the gallery.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	234 removeImage: function(imageData) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	235 var index = imageData.index;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	236
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	237 // Remove the image from the gallery data array
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	238 this.data.splice(index, 1);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	239
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	240 // Remove the global registration
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	241 delete allImages[''+imageData.hash];
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	242
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	243 // Remove the image's list item from the DOM
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	244 this.updateThumbs(function() {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	245 var $li = gallery.find('ul.thumbs')
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	246 .children(':eq('+index+')')
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	247 .remove();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	248
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	249 if (gallery.onImageRemoved)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	250 gallery.onImageRemoved(imageData, $li);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	251 });
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	252
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	253 // Update each image objects index value
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	254 this.updateIndices(index);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	255
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	256 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	257 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	258
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	259 // Updates the index values of the each of the images in the gallery after the specified index
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	260 updateIndices: function(startIndex) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	261 for (i = startIndex; i < this.data.length; i++) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	262 this.data[i].index = i;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	263 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	264
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	265 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	266 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	267
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	268 // Scraped the thumbnail container for thumbs and adds each to the gallery
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	269 initializeThumbs: function() {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	270 this.data = [];
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	271 var gallery = this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	272
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	273 this.find('ul.thumbs > li').each(function(i) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	274 gallery.addImage($(this), true, false);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	275 });
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	276
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	277 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	278 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	279
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	280 isPreloadComplete: false,
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	281
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	282 // Initalizes the image preloader
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	283 preloadInit: function() {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	284 if (this.preloadAhead == 0) return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	285
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	286 this.preloadStartIndex = this.currentImage.index;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	287 var nextIndex = this.getNextIndex(this.preloadStartIndex);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	288 return this.preloadRecursive(this.preloadStartIndex, nextIndex);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	289 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	290
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	291 // Changes the location in the gallery the preloader should work
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	292 // @param {Integer} index The index of the image where the preloader should restart at.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	293 preloadRelocate: function(index) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	294 // By changing this startIndex, the current preload script will restart
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	295 this.preloadStartIndex = index;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	296 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	297 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	298
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	299 // Recursive function that performs the image preloading
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	300 // @param {Integer} startIndex The index of the first image the current preloader started on.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	301 // @param {Integer} currentIndex The index of the current image to preload.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	302 preloadRecursive: function(startIndex, currentIndex) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	303 // Check if startIndex has been relocated
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	304 if (startIndex != this.preloadStartIndex) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	305 var nextIndex = this.getNextIndex(this.preloadStartIndex);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	306 return this.preloadRecursive(this.preloadStartIndex, nextIndex);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	307 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	308
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	309 var gallery = this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	310
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	311 // Now check for preloadAhead count
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	312 var preloadCount = currentIndex - startIndex;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	313 if (preloadCount < 0)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	314 preloadCount = this.data.length-1-startIndex+currentIndex;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	315 if (this.preloadAhead >= 0 && preloadCount > this.preloadAhead) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	316 // Do this in order to keep checking for relocated start index
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	317 setTimeout(function() { gallery.preloadRecursive(startIndex, currentIndex); }, 500);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	318 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	319 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	320
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	321 var imageData = this.data[currentIndex];
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	322 if (!imageData)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	323 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	324
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	325 // If already loaded, continue
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	326 if (imageData.image)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	327 return this.preloadNext(startIndex, currentIndex);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	328
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	329 // Preload the image
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	330 var image = new Image();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	331
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	332 image.onload = function() {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	333 imageData.image = this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	334 gallery.preloadNext(startIndex, currentIndex);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	335 };
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	336
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	337 image.alt = imageData.title;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	338 image.src = imageData.slideUrl;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	339
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	340 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	341 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	342
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	343 // Called by preloadRecursive in order to preload the next image after the previous has loaded.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	344 // @param {Integer} startIndex The index of the first image the current preloader started on.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	345 // @param {Integer} currentIndex The index of the current image to preload.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	346 preloadNext: function(startIndex, currentIndex) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	347 var nextIndex = this.getNextIndex(currentIndex);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	348 if (nextIndex == startIndex) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	349 this.isPreloadComplete = true;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	350 } else {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	351 // Use setTimeout to free up thread
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	352 var gallery = this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	353 setTimeout(function() { gallery.preloadRecursive(startIndex, nextIndex); }, 100);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	354 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	355
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	356 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	357 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	358
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	359 // Safe way to get the next image index relative to the current image.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	360 // If the current image is the last, returns 0
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	361 getNextIndex: function(index) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	362 var nextIndex = index+1;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	363 if (nextIndex >= this.data.length)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	364 nextIndex = 0;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	365 return nextIndex;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	366 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	367
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	368 // Safe way to get the previous image index relative to the current image.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	369 // If the current image is the first, return the index of the last image in the gallery.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	370 getPrevIndex: function(index) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	371 var prevIndex = index-1;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	372 if (prevIndex < 0)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	373 prevIndex = this.data.length-1;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	374 return prevIndex;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	375 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	376
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	377 // Pauses the slideshow
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	378 pause: function() {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	379 this.isSlideshowRunning = false;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	380 if (this.slideshowTimeout) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	381 clearTimeout(this.slideshowTimeout);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	382 this.slideshowTimeout = undefined;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	383 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	384
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	385 if (this.$controlsContainer) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	386 this.$controlsContainer
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	387 .find('div.ss-controls a').removeClass().addClass('play')
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	388 .attr('title', this.playLinkText)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	389 .attr('href', '#play')
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	390 .html(this.playLinkText);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	391 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	392
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	393 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	394 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	395
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	396 // Plays the slideshow
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	397 play: function() {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	398 this.isSlideshowRunning = true;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	399
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	400 if (this.$controlsContainer) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	401 this.$controlsContainer
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	402 .find('div.ss-controls a').removeClass().addClass('pause')
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	403 .attr('title', this.pauseLinkText)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	404 .attr('href', '#pause')
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	405 .html(this.pauseLinkText);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	406 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	407
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	408 if (!this.slideshowTimeout) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	409 var gallery = this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	410 this.slideshowTimeout = setTimeout(function() { gallery.ssAdvance(); }, this.delay);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	411 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	412
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	413 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	414 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	415
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	416 // Toggles the state of the slideshow (playing/paused)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	417 toggleSlideshow: function() {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	418 if (this.isSlideshowRunning)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	419 this.pause();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	420 else
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	421 this.play();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	422
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	423 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	424 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	425
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	426 // Advances the slideshow to the next image and delegates navigation to the
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	427 // history plugin when history is enabled
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	428 // enableHistory is true
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	429 ssAdvance: function() {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	430 if (this.isSlideshowRunning)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	431 this.next(true);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	432
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	433 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	434 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	435
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	436 // Advances the gallery to the next image.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	437 // @param {Boolean} dontPause Specifies whether to pause the slideshow.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	438 // @param {Boolean} bypassHistory Specifies whether to delegate navigation to the history plugin when history is enabled.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	439 next: function(dontPause, bypassHistory) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	440 this.gotoIndex(this.getNextIndex(this.currentImage.index), dontPause, bypassHistory);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	441 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	442 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	443
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	444 // Navigates to the previous image in the gallery.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	445 // @param {Boolean} dontPause Specifies whether to pause the slideshow.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	446 // @param {Boolean} bypassHistory Specifies whether to delegate navigation to the history plugin when history is enabled.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	447 previous: function(dontPause, bypassHistory) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	448 this.gotoIndex(this.getPrevIndex(this.currentImage.index), dontPause, bypassHistory);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	449 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	450 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	451
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	452 // Navigates to the next page in the gallery.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	453 // @param {Boolean} dontPause Specifies whether to pause the slideshow.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	454 // @param {Boolean} bypassHistory Specifies whether to delegate navigation to the history plugin when history is enabled.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	455 nextPage: function(dontPause, bypassHistory) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	456 var page = this.getCurrentPage();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	457 var lastPage = this.getNumPages() - 1;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	458 if (page < lastPage) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	459 var startIndex = page * this.numThumbs;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	460 var nextPage = startIndex + this.numThumbs;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	461 this.gotoIndex(nextPage, dontPause, bypassHistory);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	462 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	463
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	464 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	465 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	466
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	467 // Navigates to the previous page in the gallery.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	468 // @param {Boolean} dontPause Specifies whether to pause the slideshow.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	469 // @param {Boolean} bypassHistory Specifies whether to delegate navigation to the history plugin when history is enabled.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	470 previousPage: function(dontPause, bypassHistory) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	471 var page = this.getCurrentPage();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	472 if (page > 0) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	473 var startIndex = page * this.numThumbs;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	474 var prevPage = startIndex - this.numThumbs;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	475 this.gotoIndex(prevPage, dontPause, bypassHistory);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	476 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	477
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	478 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	479 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	480
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	481 // Navigates to the image at the specified index in the gallery
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	482 // @param {Integer} index The index of the image in the gallery to display.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	483 // @param {Boolean} dontPause Specifies whether to pause the slideshow.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	484 // @param {Boolean} bypassHistory Specifies whether to delegate navigation to the history plugin when history is enabled.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	485 gotoIndex: function(index, dontPause, bypassHistory) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	486 if (!dontPause)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	487 this.pause();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	488
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	489 if (index < 0) index = 0;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	490 else if (index >= this.data.length) index = this.data.length-1;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	491
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	492 var imageData = this.data[index];
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	493
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	494 if (!bypassHistory && this.enableHistory)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	495 $.historyLoad(String(imageData.hash)); // At the moment, historyLoad only accepts string arguments
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	496 else
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	497 this.gotoImage(imageData);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	498
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	499 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	500 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	501
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	502 // This function is garaunteed to be called anytime a gallery slide changes.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	503 // @param {Object} imageData An object holding the image metadata of the image to navigate to.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	504 gotoImage: function(imageData) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	505 var index = imageData.index;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	506
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	507 if (this.onSlideChange)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	508 this.onSlideChange(this.currentImage.index, index);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	509
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	510 this.currentImage = imageData;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	511 this.preloadRelocate(index);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	512
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	513 this.refresh();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	514
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	515 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	516 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	517
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	518 // Returns the default transition duration value. The value is halved when not
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	519 // performing a synchronized transition.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	520 // @param {Boolean} isSync Specifies whether the transitions are synchronized.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	521 getDefaultTransitionDuration: function(isSync) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	522 if (isSync)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	523 return this.defaultTransitionDuration;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	524 return this.defaultTransitionDuration / 2;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	525 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	526
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	527 // Rebuilds the slideshow image and controls and performs transitions
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	528 refresh: function() {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	529 var imageData = this.currentImage;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	530 if (!imageData)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	531 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	532
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	533 var index = imageData.index;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	534
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	535 // Update Controls
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	536 if (this.$controlsContainer) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	537 this.$controlsContainer
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	538 .find('div.nav-controls a.prev').attr('href', '#'+this.data[this.getPrevIndex(index)].hash).end()
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	539 .find('div.nav-controls a.next').attr('href', '#'+this.data[this.getNextIndex(index)].hash);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	540 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	541
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	542 var previousSlide = this.$imageContainer.find('span.current').addClass('previous').removeClass('current');
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	543 var previousCaption = 0;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	544
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	545 if (this.$captionContainer) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	546 previousCaption = this.$captionContainer.find('span.current').addClass('previous').removeClass('current');
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	547 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	548
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	549 // Perform transitions simultaneously if syncTransitions is true and the next image is already preloaded
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	550 var isSync = this.syncTransitions && imageData.image;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	551
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	552 // Flag we are transitioning
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	553 var isTransitioning = true;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	554 var gallery = this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	555
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	556 var transitionOutCallback = function() {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	557 // Flag that the transition has completed
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	558 isTransitioning = false;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	559
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	560 // Remove the old slide
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	561 previousSlide.remove();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	562
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	563 // Remove old caption
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	564 if (previousCaption)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	565 previousCaption.remove();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	566
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	567 if (!isSync) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	568 if (imageData.image && imageData.hash == gallery.data[gallery.currentImage.index].hash) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	569 gallery.buildImage(imageData, isSync);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	570 } else {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	571 // Show loading container
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	572 if (gallery.$loadingContainer) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	573 gallery.$loadingContainer.show();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	574 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	575 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	576 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	577 };
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	578
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	579 if (previousSlide.length == 0) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	580 // For the first slide, the previous slide will be empty, so we will call the callback immediately
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	581 transitionOutCallback();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	582 } else {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	583 if (this.onTransitionOut) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	584 this.onTransitionOut(previousSlide, previousCaption, isSync, transitionOutCallback);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	585 } else {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	586 previousSlide.fadeTo(this.getDefaultTransitionDuration(isSync), 0.0, transitionOutCallback);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	587 if (previousCaption)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	588 previousCaption.fadeTo(this.getDefaultTransitionDuration(isSync), 0.0);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	589 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	590 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	591
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	592 // Go ahead and begin transitioning in of next image
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	593 if (isSync)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	594 this.buildImage(imageData, isSync);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	595
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	596 if (!imageData.image) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	597 var image = new Image();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	598
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	599 // Wire up mainImage onload event
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	600 image.onload = function() {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	601 imageData.image = this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	602
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	603 // Only build image if the out transition has completed and we are still on the same image hash
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	604 if (!isTransitioning && imageData.hash == gallery.data[gallery.currentImage.index].hash) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	605 gallery.buildImage(imageData, isSync);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	606 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	607 };
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	608
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	609 // set alt and src
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	610 image.alt = imageData.title;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	611 image.src = imageData.slideUrl;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	612 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	613
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	614 // This causes the preloader (if still running) to relocate out from the currentIndex
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	615 this.relocatePreload = true;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	616
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	617 return this.syncThumbs();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	618 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	619
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	620 // Called by the refresh method after the previous image has been transitioned out or at the same time
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	621 // as the out transition when performing a synchronous transition.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	622 // @param {Object} imageData An object holding the image metadata of the image to build.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	623 // @param {Boolean} isSync Specifies whether the transitions are synchronized.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	624 buildImage: function(imageData, isSync) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	625 var gallery = this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	626 var nextIndex = this.getNextIndex(imageData.index);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	627
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	628 // Construct new hidden span for the image
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	629 var newSlide = this.$imageContainer
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	630 .append('<span class="image-wrapper current"><a class="advance-link" rel="history" href="#'+this.data[nextIndex].hash+'" title="'+imageData.title+'"> </a></span>')
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	631 .find('span.current').css('opacity', '0');
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	632
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	633 newSlide.find('a')
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	634 .append(imageData.image)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	635 .click(function(e) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	636 gallery.clickHandler(e, this);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	637 });
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	638
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	639 var newCaption = 0;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	640 if (this.$captionContainer) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	641 // Construct new hidden caption for the image
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	642 newCaption = this.$captionContainer
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	643 .append('<span class="image-caption current"></span>')
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	644 .find('span.current').css('opacity', '0')
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	645 .append(imageData.caption);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	646 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	647
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	648 // Hide the loading conatiner
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	649 if (this.$loadingContainer) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	650 this.$loadingContainer.hide();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	651 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	652
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	653 // Transition in the new image
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	654 if (this.onTransitionIn) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	655 this.onTransitionIn(newSlide, newCaption, isSync);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	656 } else {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	657 newSlide.fadeTo(this.getDefaultTransitionDuration(isSync), 1.0);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	658 if (newCaption)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	659 newCaption.fadeTo(this.getDefaultTransitionDuration(isSync), 1.0);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	660 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	661
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	662 if (this.isSlideshowRunning) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	663 if (this.slideshowTimeout)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	664 clearTimeout(this.slideshowTimeout);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	665
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	666 this.slideshowTimeout = setTimeout(function() { gallery.ssAdvance(); }, this.delay);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	667 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	668
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	669 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	670 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	671
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	672 // Returns the current page index that should be shown for the currentImage
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	673 getCurrentPage: function() {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	674 return Math.floor(this.currentImage.index / this.numThumbs);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	675 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	676
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	677 // Applies the selected class to the current image's corresponding thumbnail.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	678 // Also checks if the current page has changed and updates the displayed page of thumbnails if necessary.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	679 syncThumbs: function() {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	680 var page = this.getCurrentPage();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	681 if (page != this.displayedPage)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	682 this.updateThumbs();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	683
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	684 // Remove existing selected class and add selected class to new thumb
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	685 var $thumbs = this.find('ul.thumbs').children();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	686 $thumbs.filter('.selected').removeClass('selected');
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	687 $thumbs.eq(this.currentImage.index).addClass('selected');
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	688
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	689 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	690 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	691
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	692 // Performs transitions on the thumbnails container and updates the set of
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	693 // thumbnails that are to be displayed and the navigation controls.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	694 // @param {Delegate} postTransitionOutHandler An optional delegate that is called after
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	695 // the thumbnails container has transitioned out and before the thumbnails are rebuilt.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	696 updateThumbs: function(postTransitionOutHandler) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	697 var gallery = this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	698 var transitionOutCallback = function() {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	699 // Call the Post-transition Out Handler
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	700 if (postTransitionOutHandler)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	701 postTransitionOutHandler();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	702
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	703 gallery.rebuildThumbs();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	704
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	705 // Transition In the thumbsContainer
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	706 if (gallery.onPageTransitionIn)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	707 gallery.onPageTransitionIn();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	708 else
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	709 gallery.show();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	710 };
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	711
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	712 // Transition Out the thumbsContainer
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	713 if (this.onPageTransitionOut) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	714 this.onPageTransitionOut(transitionOutCallback);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	715 } else {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	716 this.hide();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	717 transitionOutCallback();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	718 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	719
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	720 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	721 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	722
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	723 // Updates the set of thumbnails that are to be displayed and the navigation controls.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	724 rebuildThumbs: function() {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	725 var needsPagination = this.data.length > this.numThumbs;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	726
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	727 // Rebuild top pager
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	728 if (this.enableTopPager) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	729 var $topPager = this.find('div.top');
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	730 if ($topPager.length == 0)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	731 $topPager = this.prepend('<div class="top pagination"></div>').find('div.top');
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	732 else
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	733 $topPager.empty();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	734
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	735 if (needsPagination)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	736 this.buildPager($topPager);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	737 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	738
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	739 // Rebuild bottom pager
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	740 if (this.enableBottomPager) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	741 var $bottomPager = this.find('div.bottom');
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	742 if ($bottomPager.length == 0)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	743 $bottomPager = this.append('<div class="bottom pagination"></div>').find('div.bottom');
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	744 else
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	745 $bottomPager.empty();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	746
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	747 if (needsPagination)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	748 this.buildPager($bottomPager);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	749 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	750
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	751 var page = this.getCurrentPage();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	752 var startIndex = page*this.numThumbs;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	753 var stopIndex = startIndex+this.numThumbs-1;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	754 if (stopIndex >= this.data.length)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	755 stopIndex = this.data.length-1;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	756
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	757 // Show/Hide thumbs
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	758 var $thumbsUl = this.find('ul.thumbs');
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	759 $thumbsUl.find('li').each(function(i) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	760 var $li = $(this);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	761 if (i >= startIndex && i <= stopIndex) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	762 $li.show();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	763 } else {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	764 $li.hide();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	765 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	766 });
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	767
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	768 this.displayedPage = page;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	769
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	770 // Remove the noscript class from the thumbs container ul
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	771 $thumbsUl.removeClass('noscript');
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	772
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	773 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	774 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	775
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	776 // Returns the total number of pages required to display all the thumbnails.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	777 getNumPages: function() {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	778 return Math.ceil(this.data.length/this.numThumbs);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	779 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	780
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	781 // Rebuilds the pager control in the specified matched element.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	782 // @param {jQuery} pager A jQuery element set matching the particular pager to be rebuilt.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	783 buildPager: function(pager) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	784 var gallery = this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	785 var numPages = this.getNumPages();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	786 var page = this.getCurrentPage();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	787 var startIndex = page * this.numThumbs;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	788 var pagesRemaining = this.maxPagesToShow - 1;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	789
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	790 var pageNum = page - Math.floor((this.maxPagesToShow - 1) / 2) + 1;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	791 if (pageNum > 0) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	792 var remainingPageCount = numPages - pageNum;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	793 if (remainingPageCount < pagesRemaining) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	794 pageNum = pageNum - (pagesRemaining - remainingPageCount);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	795 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	796 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	797
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	798 if (pageNum < 0) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	799 pageNum = 0;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	800 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	801
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	802 // Prev Page Link
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	803 if (page > 0) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	804 var prevPage = startIndex - this.numThumbs;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	805 pager.append('<a rel="history" href="#'+this.data[prevPage].hash+'" title="'+this.prevPageLinkText+'">'+this.prevPageLinkText+'</a>');
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	806 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	807
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	808 // Create First Page link if needed
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	809 if (pageNum > 0) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	810 this.buildPageLink(pager, 0, numPages);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	811 if (pageNum > 1)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	812 pager.append('<span class="ellipsis">…</span>');
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	813
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	814 pagesRemaining--;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	815 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	816
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	817 // Page Index Links
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	818 while (pagesRemaining > 0) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	819 this.buildPageLink(pager, pageNum, numPages);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	820 pagesRemaining--;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	821 pageNum++;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	822 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	823
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	824 // Create Last Page link if needed
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	825 if (pageNum < numPages) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	826 var lastPageNum = numPages - 1;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	827 if (pageNum < lastPageNum)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	828 pager.append('<span class="ellipsis">…</span>');
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	829
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	830 this.buildPageLink(pager, lastPageNum, numPages);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	831 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	832
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	833 // Next Page Link
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	834 var nextPage = startIndex + this.numThumbs;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	835 if (nextPage < this.data.length) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	836 pager.append('<a rel="history" href="#'+this.data[nextPage].hash+'" title="'+this.nextPageLinkText+'">'+this.nextPageLinkText+'</a>');
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	837 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	838
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	839 pager.find('a').click(function(e) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	840 gallery.clickHandler(e, this);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	841 });
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	842
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	843 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	844 },
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	845
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	846 // Builds a single page link within a pager. This function is called by buildPager
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	847 // @param {jQuery} pager A jQuery element set matching the particular pager to be rebuilt.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	848 // @param {Integer} pageNum The page number of the page link to build.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	849 // @param {Integer} numPages The total number of pages required to display all thumbnails.
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	850 buildPageLink: function(pager, pageNum, numPages) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	851 var pageLabel = pageNum + 1;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	852 var currentPage = this.getCurrentPage();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	853 if (pageNum == currentPage)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	854 pager.append('<span class="current">'+pageLabel+'</span>');
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	855 else if (pageNum < numPages) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	856 var imageIndex = pageNum*this.numThumbs;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	857 pager.append('<a rel="history" href="#'+this.data[imageIndex].hash+'" title="'+pageLabel+'">'+pageLabel+'</a>');
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	858 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	859
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	860 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	861 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	862 });
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	863
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	864 // Now initialize the gallery
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	865 $.extend(this, defaults, settings);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	866
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	867 // Verify the history plugin is available
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	868 if (this.enableHistory && !$.historyInit)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	869 this.enableHistory = false;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	870
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	871 // Select containers
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	872 if (this.imageContainerSel) this.$imageContainer = $(this.imageContainerSel);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	873 if (this.captionContainerSel) this.$captionContainer = $(this.captionContainerSel);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	874 if (this.loadingContainerSel) this.$loadingContainer = $(this.loadingContainerSel);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	875
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	876 // Initialize the thumbails
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	877 this.initializeThumbs();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	878
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	879 if (this.maxPagesToShow < 3)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	880 this.maxPagesToShow = 3;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	881
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	882 this.displayedPage = -1;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	883 this.currentImage = this.data[0];
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	884 var gallery = this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	885
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	886 // Hide the loadingContainer
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	887 if (this.$loadingContainer)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	888 this.$loadingContainer.hide();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	889
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	890 // Setup controls
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	891 if (this.controlsContainerSel) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	892 this.$controlsContainer = $(this.controlsContainerSel).empty();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	893
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	894 if (this.renderSSControls) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	895 if (this.autoStart) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	896 this.$controlsContainer
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	897 .append('<div class="ss-controls"><a href="#pause" class="pause" title="'+this.pauseLinkText+'">'+this.pauseLinkText+'</a></div>');
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	898 } else {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	899 this.$controlsContainer
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	900 .append('<div class="ss-controls"><a href="#play" class="play" title="'+this.playLinkText+'">'+this.playLinkText+'</a></div>');
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	901 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	902
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	903 this.$controlsContainer.find('div.ss-controls a')
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	904 .click(function(e) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	905 gallery.toggleSlideshow();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	906 e.preventDefault();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	907 return false;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	908 });
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	909 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	910
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	911 if (this.renderNavControls) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	912 this.$controlsContainer
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	913 .append('<div class="nav-controls"><a class="prev" rel="history" title="'+this.prevLinkText+'">'+this.prevLinkText+'</a><a class="next" rel="history" title="'+this.nextLinkText+'">'+this.nextLinkText+'</a></div>')
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	914 .find('div.nav-controls a')
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	915 .click(function(e) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	916 gallery.clickHandler(e, this);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	917 });
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	918 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	919 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	920
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	921 var initFirstImage = !this.enableHistory \|\| !location.hash;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	922 if (this.enableHistory && location.hash) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	923 var hash = $.galleriffic.normalizeHash(location.hash);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	924 var imageData = allImages[hash];
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	925 if (!imageData)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	926 initFirstImage = true;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	927 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	928
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	929 // Setup gallery to show the first image
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	930 if (initFirstImage)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	931 this.gotoIndex(0, false, true);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	932
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	933 // Setup Keyboard Navigation
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	934 if (this.enableKeyboardNavigation) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	935 $(document).keydown(function(e) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	936 var key = e.charCode ? e.charCode : e.keyCode ? e.keyCode : 0;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	937 switch(key) {
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	938 case 32: // space
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	939 gallery.next();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	940 e.preventDefault();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	941 break;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	942 case 33: // Page Up
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	943 gallery.previousPage();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	944 e.preventDefault();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	945 break;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	946 case 34: // Page Down
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	947 gallery.nextPage();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	948 e.preventDefault();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	949 break;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	950 case 35: // End
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	951 gallery.gotoIndex(gallery.data.length-1);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	952 e.preventDefault();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	953 break;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	954 case 36: // Home
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	955 gallery.gotoIndex(0);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	956 e.preventDefault();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	957 break;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	958 case 37: // left arrow
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	959 gallery.previous();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	960 e.preventDefault();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	961 break;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	962 case 39: // right arrow
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	963 gallery.next();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	964 e.preventDefault();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	965 break;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	966 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	967 });
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	968 }
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	969
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	970 // Auto start the slideshow
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	971 if (this.autoStart)
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	972 this.play();
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	973
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	974 // Kickoff Image Preloader after 1 second
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	975 setTimeout(function() { gallery.preloadInit(); }, 1000);
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	976
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	977 return this;
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	978 };
967512924317 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d brasset_jensen parents: diff changeset	979 })(jQuery);