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1 #-rw-r--r-- 1 james universe 830134 2005-09-13 10:12 phiX.fa.amb
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2 #-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 phiX.fa.ann
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3 #-rw-r--r-- 1 james universe 269808 2005-09-13 10:12 phiX.fa.bwt
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4 #...etc...
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5 #
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6 #Your bwa_index.loc file should include an entry per line for each
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7 #index set you have stored. The "file" in the path does not actually
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8 #exist, but it is the prefix for the actual index files. For example:
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9 #
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10 #phiX174 phiX phiX174 /depot/data2/galaxy/phiX/base/phiX.fa
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11 #hg18canon hg18 hg18 Canonical /depot/data2/galaxy/hg18/base/hg18canon.fa
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12 #hg18full hg18 hg18 Full /depot/data2/galaxy/hg18/base/hg18full.fa
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13 #/orig/path/hg19.fa hg19 hg19 /depot/data2/galaxy/hg19/base/hg19.fa
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14 #...etc... |
