annotate test-data/res_files/reads-sample-small.fastq-piRNAs-TEs.html @ 67:740884893563 draft

planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit fa75629bca78685de0106390758c0e85f1ca0836
author brasset_jensen
date Thu, 31 Jan 2019 16:10:58 -0500
parents 9185ca0a7b43
children
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2 <!DOCTYPE html>
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3 <html lang="en">
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4 <head>
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5 <meta charset="utf-8">
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6 <title>pipeline</title>
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7 <meta name="viewport" content="width=device-width, initial-scale=1.0">
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8 <meta name="description" content="">
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9 <meta name="author" content="">
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10 <!-- Le styles -->
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11 <link href="css/bootstrap.css" rel="stylesheet">
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12 <link href="css/bootstrap-table.css" rel="stylesheet">
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13 <style type="text/css">
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17 }
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26 }
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69 }
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70 div.slideshow {
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79 }
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81 display: block;
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82 width: 550px;
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134 div.pagination {
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137 div.navigation div.top {
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150 }
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151 div.pagination a:hover {
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160 }
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174 }
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175 span.image-caption {
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181 }
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182 div.caption {
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185
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186 /* Featurettes
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189 .featurette {
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190 padding-top: 20px; /* Vertically center images part 1: add padding above and below text. */
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191 overflow: hidden; /* Vertically center images part 2: clear their floats. */
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192 text-align: center;
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193 }
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194
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195 .featurette-p
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pierre.pouchin
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196 {
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197 text-align: left;
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198 }
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199
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200 .featurette-image {
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201 margin-top: 10px; /* Vertically center images part 3: negative margin up the image the same amount of the padding to center it. */
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202 width: 450px;
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203 height: auto;
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204 }
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205
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206 </style>
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pierre.pouchin
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207 <link href="css/bootstrap-responsive.css" rel="stylesheet">
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pierre.pouchin
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208 </head>
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pierre.pouchin
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209 <body>
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pierre.pouchin
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210
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pierre.pouchin
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211 <div class="navbar navbar-inverse navbar-fixed-top">
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pierre.pouchin
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212 <div class="navbar-inner">
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pierre.pouchin
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213 <div class="container">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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214 <button type="button" class="btn btn-navbar" data-toggle="collapse" data-target=".nav-collapse">
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pierre.pouchin
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215 <span class="icon-bar"></span>
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pierre.pouchin
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216 <span class="icon-bar"></span>
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pierre.pouchin
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217 <span class="icon-bar"></span>
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pierre.pouchin
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218 </button>
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pierre.pouchin
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219 <a class="brand" href="report.txt">Report</a>
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pierre.pouchin
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220 <div class="nav-collapse collapse">
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pierre.pouchin
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221 <ul class="nav">
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pierre.pouchin
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222 <li class="active"><a href="reads-sample-small.fastq.html">reads-sample-small.fastq</a></li>
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pierre.pouchin
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223 </ul>
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pierre.pouchin
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224 </div><!--/.nav-collapse -->
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pierre.pouchin
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225 </div>
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pierre.pouchin
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226 </div>
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pierre.pouchin
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227 </div> <div class="container"> <p><a class="btn" href="reads-sample-small.fastq-piRNAs-PPP.html">Ping Pong Partners</a></p>
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pierre.pouchin
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228 </div>
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pierre.pouchin
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229 <div class="container">
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pierre.pouchin
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230 <div class="featurette">
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pierre.pouchin
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231 <h1>Transposable elements</h1>
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pierre.pouchin
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232 <p class="featurette-p">
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pierre.pouchin
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233 <A HREF="reads-sample-small.fastq/subgroups/piRNAs//piRNAs-TEs_minus.bedgraph">bedgraph minus strand</A><br/>
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pierre.pouchin
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234 <A HREF="reads-sample-small.fastq/subgroups/piRNAs//piRNAs-TEs_plus.bedgraph">bedgraph plus strand</A><br/>
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pierre.pouchin
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235 <A HREF="reads-sample-small.fastq/subgroups/piRNAs//piRNAs-TEs_reads_counts.txt">read number per TE 0 to 3 mismatches (txt)</A><br/>
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pierre.pouchin
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236 <A HREF="reads-sample-small.fastq/subgroups/piRNAs//piRNAs-TEs_reads_counts_mismatches.txt">read number per TE with 1 to 3 mismatches (txt)</A><br/>
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pierre.pouchin
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237 <A HREF="reads-sample-small.fastq/subgroups/piRNAs//piRNAs-TEs_reads_counts_nomismatches.txt">read number per TE with no mismatch (txt)</A><br/>
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pierre.pouchin
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238 <A HREF="reads-sample-small.fastq/subgroups/piRNAs//piRNAs-TEs_sorted.bam">TEs mappers (sorted bam)</A><br/>
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pierre.pouchin
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239 <A HREF="reads-sample-small.fastq/subgroups/piRNAs//piRNAs-TEs_unique_sorted.bam">TEs unique mappers (sorted bam)</A><br/>
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pierre.pouchin
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240
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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241 </p>
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pierre.pouchin
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242 </div>
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pierre.pouchin
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243 </div>
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pierre.pouchin
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244
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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245 <div id="page">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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246 <div id="container">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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247 <div class="each-gallery">
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pierre.pouchin
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248 <div id="gallery" class="content">
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pierre.pouchin
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249 <div id="controls0" class="controls"></div>
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pierre.pouchin
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250 <div class="slideshow-container">
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pierre.pouchin
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251 <div id="loading0" class="loader"></div>
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pierre.pouchin
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252 <div id="slideshow0" class="slideshow"></div>
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pierre.pouchin
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253 </div>
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pierre.pouchin
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254 <div id="caption0" class="caption-container">Reads randomly assigned</div>
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pierre.pouchin
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255 </div>
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pierre.pouchin
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256 <div id="thumbs0" class="navigation">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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257 <input type="text" id="myInput0" onkeyup="search(this)" placeholder="Search for names...">
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pierre.pouchin
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258 <ul class="thumbs noscript">
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pierre.pouchin
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259
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pierre.pouchin
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260 <li>
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pierre.pouchin
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261 <a class="thumb" href="reads-sample-small.fastq/subgroups/piRNAs//Gviz_TEs/BATUMI_I.png" title="BATUMI_I">BATUMI_I</a>
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pierre.pouchin
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262 </li>
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pierre.pouchin
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263
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pierre.pouchin
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264 <li>
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pierre.pouchin
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265 <a class="thumb" href="reads-sample-small.fastq/subgroups/piRNAs//Gviz_TEs/BATUMI_LTR.png" title="BATUMI_LTR">BATUMI_LTR</a>
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pierre.pouchin
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266 </li>
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pierre.pouchin
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267
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pierre.pouchin
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268 <li>
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pierre.pouchin
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269 <a class="thumb" href="reads-sample-small.fastq/subgroups/piRNAs//Gviz_TEs/BS2.png" title="BS2">BS2</a>
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pierre.pouchin
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270 </li>
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271
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pierre.pouchin
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272 <li>
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pierre.pouchin
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273 <a class="thumb" href="reads-sample-small.fastq/subgroups/piRNAs//Gviz_TEs/DMCR1A.png" title="DMCR1A">DMCR1A</a>
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pierre.pouchin
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274 </li>
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275
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276 <li>
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277 <a class="thumb" href="reads-sample-small.fastq/subgroups/piRNAs//Gviz_TEs/DMRT1B.png" title="DMRT1B">DMRT1B</a>
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pierre.pouchin
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278 </li>
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279
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pierre.pouchin
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280 <li>
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pierre.pouchin
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281 <a class="thumb" href="reads-sample-small.fastq/subgroups/piRNAs//Gviz_TEs/FW.png" title="FW">FW</a>
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pierre.pouchin
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282 </li>
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283
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pierre.pouchin
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284 <li>
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pierre.pouchin
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285 <a class="thumb" href="reads-sample-small.fastq/subgroups/piRNAs//Gviz_TEs/G6_DM.png" title="G6_DM">G6_DM</a>
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pierre.pouchin
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286 </li>
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287
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pierre.pouchin
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288 <li>
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pierre.pouchin
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289 <a class="thumb" href="reads-sample-small.fastq/subgroups/piRNAs//Gviz_TEs/Gypsy2-LTR_DM.png" title="Gypsy2-LTR_DM">Gypsy2-LTR_DM</a>
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pierre.pouchin
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290 </li>
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pierre.pouchin
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291
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pierre.pouchin
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292 <li>
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pierre.pouchin
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293 <a class="thumb" href="reads-sample-small.fastq/subgroups/piRNAs//Gviz_TEs/I_DM.png" title="I_DM">I_DM</a>
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pierre.pouchin
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294 </li>
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pierre.pouchin
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295
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pierre.pouchin
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296 <li>
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pierre.pouchin
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297 <a class="thumb" href="reads-sample-small.fastq/subgroups/piRNAs//Gviz_TEs/MAX_I.png" title="MAX_I">MAX_I</a>
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pierre.pouchin
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298 </li>
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pierre.pouchin
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299
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pierre.pouchin
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300 <li>
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pierre.pouchin
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301 <a class="thumb" href="reads-sample-small.fastq/subgroups/piRNAs//Gviz_TEs/MAX_LTR.png" title="MAX_LTR">MAX_LTR</a>
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pierre.pouchin
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302 </li>
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303
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pierre.pouchin
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304 <li>
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pierre.pouchin
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305 <a class="thumb" href="reads-sample-small.fastq/subgroups/piRNAs//Gviz_TEs/PROTOP.png" title="PROTOP">PROTOP</a>
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pierre.pouchin
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306 </li>
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pierre.pouchin
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307
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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308 </ul>
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pierre.pouchin
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309 </div>
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pierre.pouchin
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310 <div style="clear: both;"></div></div>
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pierre.pouchin
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311 </div>
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pierre.pouchin
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312 </div>
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pierre.pouchin
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313
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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314 <!-- FOOTER -->
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pierre.pouchin
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315 <div class="container">
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pierre.pouchin
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316 <footer>
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pierre.pouchin
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317
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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318 </footer>
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pierre.pouchin
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319 </div>
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pierre.pouchin
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320 <!-- Le javascript
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pierre.pouchin
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321 ================================================== -->
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pierre.pouchin
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322 <!-- Placed at the end of the document so the pages load faster -->
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pierre.pouchin
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323 <script type="text/javascript" src="js/filter.js"></script>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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324 <script type="text/javascript" src="js/jquery.js"></script>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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325 <script type="text/javascript" src="js/jquery-1.3.2.js"></script>
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pierre.pouchin
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326 <script type="text/javascript" src="js/jquery.galleriffic.js"></script>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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327 <script type="text/javascript" src="js/jquery.opacityrollover.js"></script>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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328 <script type="text/javascript" src="js/bootstrap-table.js"></script>
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pierre.pouchin
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329 <script type="text/javascript" src="js/bootstrap.min.js"></script>
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pierre.pouchin
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330 <script type="text/javascript">
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pierre.pouchin
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331 jQuery(document).ready(function($) {
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pierre.pouchin
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332 // We only want these styles applied when javascript is enabled
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pierre.pouchin
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333 $('div.navigation').css({'width' : '300px', 'float' : 'left'});
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pierre.pouchin
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334 $('div.content').css('display', 'block');
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pierre.pouchin
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335
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pierre.pouchin
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336 $(".each-gallery").each(function(i){
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pierre.pouchin
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337 // Initially set opacity on thumbs and add
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pierre.pouchin
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338 // additional styling for hover effect on thumbs
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pierre.pouchin
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339 var onMouseOutOpacity = 0.67;
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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340 $('#thumbs + i + ul.thumbs li').opacityrollover({
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pierre.pouchin
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341 mouseOutOpacity: onMouseOutOpacity,
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pierre.pouchin
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342 mouseOverOpacity: 1.0,
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pierre.pouchin
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343 fadeSpeed: 'fast',
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pierre.pouchin
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344 exemptionSelector: '.selected'
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pierre.pouchin
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345 });
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pierre.pouchin
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346
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pierre.pouchin
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347 // Initialize Advanced Galleriffic Gallery
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pierre.pouchin
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348 var gallery = $('#thumbs'+i).galleriffic({
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pierre.pouchin
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349 delay: 2500,
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pierre.pouchin
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350 numThumbs: 22,
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pierre.pouchin
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351 preloadAhead: 10,
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pierre.pouchin
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352 enableTopPager: true,
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pierre.pouchin
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353 enableBottomPager: true,
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pierre.pouchin
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354 maxPagesToShow: 7,
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pierre.pouchin
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355 imageContainerSel: '#slideshow'+ i,
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pierre.pouchin
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356 controlsContainerSel: '#controls' + i,
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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357 captionContainerSel: '#caption' + i,
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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358 loadingContainerSel: '#loading' + i,
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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359 renderSSControls: true,
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pierre.pouchin
parents:
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360 renderNavControls: true,
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pierre.pouchin
parents:
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361 playLinkText: 'Play',
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pierre.pouchin
parents:
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362 pauseLinkText: 'Pause',
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pierre.pouchin
parents:
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363 prevLinkText: '&lsaquo; Previous',
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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364 nextLinkText: 'Next &rsaquo;',
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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365 nextPageLinkText: 'Next &rsaquo;',
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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366 prevPageLinkText: '&lsaquo; Prev',
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pierre.pouchin
parents:
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367 enableHistory: false,
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pierre.pouchin
parents:
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368 autoStart: false,
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pierre.pouchin
parents:
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369 syncTransitions: true,
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pierre.pouchin
parents:
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370 defaultTransitionDuration: 900,
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pierre.pouchin
parents:
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371 onSlideChange: function(prevIndex, nextIndex) {
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pierre.pouchin
parents:
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372 // 'this' refers to the gallery, which is an extension of $('#thumbs')
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pierre.pouchin
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373 this.find('ul.thumbs').children()
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pierre.pouchin
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374 .eq(prevIndex).fadeTo('fast', onMouseOutOpacity).end()
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pierre.pouchin
parents:
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375 .eq(nextIndex).fadeTo('fast', 1.0);
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pierre.pouchin
parents:
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376 },
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pierre.pouchin
parents:
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377 onPageTransitionOut: function(callback) {
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pierre.pouchin
parents:
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378 this.fadeTo('fast', 0.0, callback);
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pierre.pouchin
parents:
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379 },
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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380 onPageTransitionIn: function() {
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pierre.pouchin
parents:
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381 this.fadeTo('fast', 1.0);
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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382 }
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pierre.pouchin
parents:
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383 });
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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384 });
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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385 });
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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386 </script>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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387 </body>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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388 </html>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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389