annotate test-data/res_files/reads-sample-small.fastq-piRNAs-genome.html @ 67:740884893563 draft

planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit fa75629bca78685de0106390758c0e85f1ca0836
author brasset_jensen
date Thu, 31 Jan 2019 16:10:58 -0500
parents 11708af40030
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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2 <!DOCTYPE html>
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3 <html lang="en">
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4 <head>
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5 <meta charset="utf-8">
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6 <title>pipeline</title>
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7 <meta name="viewport" content="width=device-width, initial-scale=1.0">
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8 <meta name="description" content="">
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9 <meta name="author" content="">
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10 <!-- Le styles -->
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186 /* Featurettes
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190 padding-top: 20px; /* Vertically center images part 1: add padding above and below text. */
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pierre.pouchin
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191 overflow: hidden; /* Vertically center images part 2: clear their floats. */
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pierre.pouchin
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192 text-align: center;
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pierre.pouchin
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193 }
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pierre.pouchin
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194
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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195 .featurette-p
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pierre.pouchin
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196 {
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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197 text-align: left;
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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198 }
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pierre.pouchin
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199
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pierre.pouchin
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200 .featurette-image {
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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201 margin-top: 10px; /* Vertically center images part 3: negative margin up the image the same amount of the padding to center it. */
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pierre.pouchin
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202 width: 450px;
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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203 height: auto;
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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204 }
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pierre.pouchin
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205
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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206 </style>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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207 <link href="css/bootstrap-responsive.css" rel="stylesheet">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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208 </head>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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209 <body>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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210
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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211 <div class="navbar navbar-inverse navbar-fixed-top">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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212 <div class="navbar-inner">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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213 <div class="container">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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214 <button type="button" class="btn btn-navbar" data-toggle="collapse" data-target=".nav-collapse">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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215 <span class="icon-bar"></span>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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216 <span class="icon-bar"></span>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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217 <span class="icon-bar"></span>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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218 </button>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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219 <a class="brand" href="report.txt">Report</a>
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pierre.pouchin
parents:
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220 <div class="nav-collapse collapse">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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221 <ul class="nav">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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222 <li class="active"><a href="reads-sample-small.fastq.html">reads-sample-small.fastq</a></li>
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pierre.pouchin
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223 </ul>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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224 </div><!--/.nav-collapse -->
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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225 </div>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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226 </div>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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227 </div>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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228 <div class="container">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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229 <div class="featurette">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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230 <h1>Genome</h1>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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231 <p class="featurette-p">
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pierre.pouchin
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232 <A HREF="reads-sample-small.fastq/subgroups/piRNAs//piRNAs-genome_minus.bedgraph">bedgraph minus strand</A><br/>
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pierre.pouchin
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233 <A HREF="reads-sample-small.fastq/subgroups/piRNAs//piRNAs-genome_plus.bedgraph">bedgraph plus strand</A><br/>
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pierre.pouchin
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234 <A HREF="reads-sample-small.fastq/subgroups/piRNAs//piRNAs-genome_sorted.bam">genome mappers (sorted bam)</A><br/>
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pierre.pouchin
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235 <A HREF="reads-sample-small.fastq/subgroups/piRNAs//piRNAs-genome_unique_minus.bedgraph">bedgraph unique minus strand</A><br/>
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pierre.pouchin
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236 <A HREF="reads-sample-small.fastq/subgroups/piRNAs//piRNAs-genome_unique_plus.bedgraph">bedgraph unique plus strand</A><br/>
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pierre.pouchin
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237 <A HREF="reads-sample-small.fastq/subgroups/piRNAs//piRNAs-genome_unique_sorted.bam">genome unique mappers (sorted bam)</A><br/>
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pierre.pouchin
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238
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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239 </p>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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240 </div>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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241 </div>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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242
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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243 <div id="page">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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244 <div id="container">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
diff changeset
245 <div class="each-gallery">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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246 <div id="gallery" class="content">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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247 <div id="controls0" class="controls"></div>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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248 <div class="slideshow-container">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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249 <div id="loading0" class="loader"></div>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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250 <div id="slideshow0" class="slideshow"></div>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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251 </div>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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252 <div id="caption0" class="caption-container">Uniquely mapped reads</div>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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diff changeset
253 </div>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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254 <div id="thumbs0" class="navigation">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
diff changeset
255 <input type="text" id="myInput0" onkeyup="search(this)" placeholder="Search for names...">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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256 <ul class="thumbs noscript">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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257
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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258 <li>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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259 <a class="thumb" href="reads-sample-small.fastq/subgroups/piRNAs//Gviz_genome/unique/chrom_1.png" title="chrom_1">chrom_1</a>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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260 </li>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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261
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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262 <li>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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263 <a class="thumb" href="reads-sample-small.fastq/subgroups/piRNAs//Gviz_genome/unique/chrom_6.png" title="chrom_6">chrom_6</a>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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264 </li>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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265
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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266 </ul>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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267 </div>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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268 </div>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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269 <div id="page">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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270 <div id="container">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
diff changeset
271 <div class="each-gallery">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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272 <div id="gallery" class="content">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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273 <div id="controls1" class="controls"></div>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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274 <div class="slideshow-container">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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275 <div id="loading1" class="loader"></div>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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276 <div id="slideshow1" class="slideshow"></div>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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277 </div>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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278 <div id="caption1" class="caption-container">Reads randomly assigned</div>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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279 </div>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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280 <div id="thumbs1" class="navigation">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
diff changeset
281 <input type="text" id="myInput1" onkeyup="search(this)" placeholder="Search for names...">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
diff changeset
282 <ul class="thumbs noscript">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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283
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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284 <li>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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285 <a class="thumb" href="reads-sample-small.fastq/subgroups/piRNAs//Gviz_genome/rand/chrom_1.png" title="chrom_1">chrom_1</a>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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286 </li>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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287
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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288 <li>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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289 <a class="thumb" href="reads-sample-small.fastq/subgroups/piRNAs//Gviz_genome/rand/chrom_6.png" title="chrom_6">chrom_6</a>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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290 </li>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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291
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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292 </ul>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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293 </div>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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294 <div style="clear: both;"></div></div>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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295 </div>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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296 </div>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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297
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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298 <!-- FOOTER -->
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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299 <div class="container">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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300 <footer>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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301
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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302 </footer>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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303 </div>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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304 <!-- Le javascript
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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305 ================================================== -->
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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306 <!-- Placed at the end of the document so the pages load faster -->
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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307 <script type="text/javascript" src="js/filter.js"></script>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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308 <script type="text/javascript" src="js/jquery.js"></script>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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309 <script type="text/javascript" src="js/jquery-1.3.2.js"></script>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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310 <script type="text/javascript" src="js/jquery.galleriffic.js"></script>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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311 <script type="text/javascript" src="js/jquery.opacityrollover.js"></script>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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312 <script type="text/javascript" src="js/bootstrap-table.js"></script>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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313 <script type="text/javascript" src="js/bootstrap.min.js"></script>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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314 <script type="text/javascript">
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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315 jQuery(document).ready(function($) {
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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316 // We only want these styles applied when javascript is enabled
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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317 $('div.navigation').css({'width' : '300px', 'float' : 'left'});
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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318 $('div.content').css('display', 'block');
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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319
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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320 $(".each-gallery").each(function(i){
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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321 // Initially set opacity on thumbs and add
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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322 // additional styling for hover effect on thumbs
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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323 var onMouseOutOpacity = 0.67;
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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324 $('#thumbs + i + ul.thumbs li').opacityrollover({
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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325 mouseOutOpacity: onMouseOutOpacity,
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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326 mouseOverOpacity: 1.0,
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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327 fadeSpeed: 'fast',
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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328 exemptionSelector: '.selected'
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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329 });
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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330
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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331 // Initialize Advanced Galleriffic Gallery
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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332 var gallery = $('#thumbs'+i).galleriffic({
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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333 delay: 2500,
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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334 numThumbs: 22,
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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335 preloadAhead: 10,
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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336 enableTopPager: true,
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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337 enableBottomPager: true,
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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338 maxPagesToShow: 7,
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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339 imageContainerSel: '#slideshow'+ i,
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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340 controlsContainerSel: '#controls' + i,
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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341 captionContainerSel: '#caption' + i,
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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342 loadingContainerSel: '#loading' + i,
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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343 renderSSControls: true,
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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344 renderNavControls: true,
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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345 playLinkText: 'Play',
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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346 pauseLinkText: 'Pause',
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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347 prevLinkText: '&lsaquo; Previous',
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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348 nextLinkText: 'Next &rsaquo;',
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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349 nextPageLinkText: 'Next &rsaquo;',
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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350 prevPageLinkText: '&lsaquo; Prev',
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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351 enableHistory: false,
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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352 autoStart: false,
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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353 syncTransitions: true,
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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354 defaultTransitionDuration: 900,
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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355 onSlideChange: function(prevIndex, nextIndex) {
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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356 // 'this' refers to the gallery, which is an extension of $('#thumbs')
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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357 this.find('ul.thumbs').children()
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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358 .eq(prevIndex).fadeTo('fast', onMouseOutOpacity).end()
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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359 .eq(nextIndex).fadeTo('fast', 1.0);
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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360 },
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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361 onPageTransitionOut: function(callback) {
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
diff changeset
362 this.fadeTo('fast', 0.0, callback);
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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363 },
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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364 onPageTransitionIn: function() {
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
diff changeset
365 this.fadeTo('fast', 1.0);
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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366 }
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
diff changeset
367 });
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
diff changeset
368 });
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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369 });
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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370 </script>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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371 </body>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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372 </html>
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
parents:
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373