|
5
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
|
3 <package name="bwa" version="0.7.12">
|
|
|
4 <repository changeset_revision="dcae4134cd62" name="package_bwa_0_7_12" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
|
|
|
5 </package>
|
|
|
6 <package name="bedtools" version="2.24">
|
|
|
7 <repository changeset_revision="3416a1d4a582" name="package_bedtools_2_24" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
|
|
|
8 </package>
|
|
|
9 <package name="samtools" version="1.2">
|
|
|
10 <repository changeset_revision="f6ae3ba3f3c1" name="package_samtools_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
|
|
|
11 </package>
|
|
|
12 <package name="R" version="3.1.2">
|
|
|
13 <repository changeset_revision="6e0eee4ea4e1" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
|
|
|
14 </package>
|
|
|
15 <package name="Perl" version="5.18">
|
|
|
16 <repository changeset_revision="6e0eee4ea4e1" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
|
|
|
17 </package>
|
|
|
18 <package name="srnapipe" version="0.0.1">
|
|
|
19 <install version="1.0">
|
|
|
20 <actions>
|
|
|
21 <action type="setup_r_environment">
|
|
|
22 <repository changeset_revision="6e0eee4ea4e1" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
|
|
|
23 <package name="R" version="3.1.2" />
|
|
|
24 </repository>
|
|
|
25 <package>https://depot.galaxyproject.org/software/plotrix/plotrix_3.6_src_all.tar.gz</package>
|
|
|
26 <package>https://depot.galaxyproject.org/software/bioconductor-sushi/bioconductor-sushi_1.14.0_src_all.tar.gz</package>
|
|
|
27 <package>https://depot.galaxyproject.org/software/RColorBrewer/RColorBrewer_1.1-2_src_all.tar.gz</package>
|
|
|
28 <package>https://depot.galaxyproject.org/software/ggplot2/ggplot2_1.0.1_src_all.tar.gz</package>
|
|
|
29 </action>
|
|
|
30 </actions>
|
|
|
31 </install>
|
|
|
32 </package>
|
|
|
33 <package name="srnapipe" version="0.0.1">
|
|
|
34 <install version="1.0">
|
|
|
35 <actions>
|
|
|
36 <action type="setup_perl_environment">
|
|
|
37 <repository changeset_revision="6e0eee4ea4e1" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
|
|
|
38 <package name="Perl" version="5.18" />
|
|
|
39 </repository>
|
|
|
40 <package>https://depot.galaxyproject.org/software/perl-statistics-r/perl-statistics-r_0.34_src_all.tar.gz</package>
|
|
|
41 <package>https://cpan.metacpan.org/authors/id/Y/YA/YANICK/Parallel-ForkManager-1.19.tar.gz</package>
|
|
|
42 <package>https://cpan.metacpan.org/authors/id/F/FA/FANGLY/Statistics-R-0.34.tar.gz</package>
|
|
|
43 <package>https://cpan.metacpan.org/authors/id/J/JV/JV/Getopt-Long-2.50.tar.gz</package>
|
|
|
44 <package>https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/String-Random-0.29.tar.gz</package>
|
|
|
45 </action>
|
|
|
46 </actions>
|
|
|
47 </install>
|
|
|
48 </package>
|
|
|
49 </tool_dependency>
|
