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comparison sRNAPipe.xml @ 65:0e9adbd82bb4 draft

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planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit a623ac00600191204ede63c45862a7fbb561afd2
author brasset_jensen
date Wed, 30 Jan 2019 02:41:24 -0500
parents 967512924317
children ff36e76d696a
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64:967512924317 65:0e9adbd82bb4
20 </when> 20 </when>
21 </conditional> 21 </conditional>
22 </xml> 22 </xml>
23 </macros> 23 </macros>
24 <requirements> 24 <requirements>
25 <requirement type="package" version="0.7.12">bwa</requirement> 25 <requirement type="package" version="1.9">samtools</requirement>
26 <requirement type="package" version="2.24">bedtools</requirement> 26 <requirement type="package">bwa</requirement>
27 <requirement type="package" version="1.5">samtools</requirement> 27 <requirement type="package">bedtools</requirement>
28 <requirement type="package" version="2.50">perl-getopt-long</requirement> 28 <requirement type="package">perl</requirement>
29 <requirement type="package" version="1.17">perl-parallel-forkmanager</requirement> 29 <requirement type="package">perl-getopt-long</requirement>
30 <requirement type="package" version="0.34">perl-statistics-r</requirement> 30 <requirement type="package">perl-parallel-forkmanager</requirement>
31 <requirement type="package" version="0.30">perl-string-random</requirement> 31 <requirement type="package">perl-statistics-r</requirement>
32 <requirement type="package" version="0.38">perl-file-copy-recursive</requirement> 32 <requirement type="package">perl-string-random</requirement>
33 <requirement type="package" version="0.1">perl-math-cdf</requirement> 33 <requirement type="package">perl-file-copy-recursive</requirement>
34 <requirement type="package" version="3.6">r-plotrix</requirement> 34 <requirement type="package">perl-math-cdf</requirement>
35 <requirement type="package">r-base</requirement>
36 <requirement type="package">r-plotrix</requirement>
37 <requirement type="package">r-rcolorbrewer</requirement>
38 <requirement type="package">r-ggplot2</requirement>
35 <requirement type="package" version="1.14.0">bioconductor-sushi</requirement> 39 <requirement type="package" version="1.14.0">bioconductor-sushi</requirement>
36 <requirement type="package" version="1.1_2">r-rcolorbrewer</requirement>
37 <requirement type="package" version="2.2.1">r-ggplot2</requirement>
38 </requirements> 40 </requirements>
39 <version_command>perl '$__tool_directory__/bin/sRNAPipe.pl' | grep 'version' | grep "version" | cut -d ' ' -f 3</version_command> 41 <version_command>perl '$__tool_directory__/bin/sRNAPipe.pl' | grep 'version' | grep "version" | cut -d ' ' -f 3</version_command>
40 <command detect_errors="aggressive"><![CDATA[ 42 <command detect_errors="aggressive"><![CDATA[
41 perl '$__tool_directory__/bin/sRNAPipe.pl' 43 perl '$__tool_directory__/bin/sRNAPipe.pl'
42 44