Mercurial > repos > brasset_jensen > srnapipe
comparison tool-data/bwa_index.loc.sample @ 1:1df6aaac800e draft
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| author | brasset_jensen |
|---|---|
| date | Wed, 13 Dec 2017 10:40:50 -0500 |
| parents | |
| children | 4bc00caa60b4 |
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| 0:e4e71401c577 | 1:1df6aaac800e |
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| 1 #-rw-r--r-- 1 james universe 830134 2005-09-13 10:12 phiX.fa.amb | |
| 2 #-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 phiX.fa.ann | |
| 3 #-rw-r--r-- 1 james universe 269808 2005-09-13 10:12 phiX.fa.bwt | |
| 4 #...etc... | |
| 5 # | |
| 6 #Your bwa_index.loc file should include an entry per line for each | |
| 7 #index set you have stored. The "file" in the path does not actually | |
| 8 #exist, but it is the prefix for the actual index files. For example: | |
| 9 # | |
| 10 #phiX174 phiX phiX174 /depot/data2/galaxy/phiX/base/phiX.fa | |
| 11 #hg18canon hg18 hg18 Canonical /depot/data2/galaxy/hg18/base/hg18canon.fa | |
| 12 #hg18full hg18 hg18 Full /depot/data2/galaxy/hg18/base/hg18full.fa | |
| 13 #/orig/path/hg19.fa hg19 hg19 /depot/data2/galaxy/hg19/base/hg19.fa | |
| 14 #...etc... |