Mercurial > repos > brasset_jensen > srnapipe

comparison sRNAPipe.xml @ 46:20547000266a draft

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Uploaded
author pierre.pouchin
date Thu, 06 Sep 2018 11:01:41 -0400
parents 263819fdda14
children ed90cecf4383
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45:263819fdda14 46:20547000266a
1 <tool id="sRNAPipe" name="sRNAPipe" version="0.0.1"> 1 <tool id="sRNAPipe" name="sRNAPipe" version="1.0">
2 <description>In-depth study of small RNA</description> 2 <description>In-depth study of small RNA</description>
3 <command interpreter="perl"> 3 <command interpreter="perl">
4 4
5 ./bin/sRNAPipe.pl 5 ./bin/sRNAPipe.pl
6 6
90 <requirement type="package" version="1.19">perl-parallel-forkmanager</requirement> 90 <requirement type="package" version="1.19">perl-parallel-forkmanager</requirement>
91 <requirement type="package" version="0.34" >perl-statistics-r</requirement> 91 <requirement type="package" version="0.34" >perl-statistics-r</requirement>
92 <requirement type="package" version="0.29">perl-string-random</requirement> 92 <requirement type="package" version="0.29">perl-string-random</requirement>
93 <requirement type="package" version="3.6">r-plotrix</requirement> 93 <requirement type="package" version="3.6">r-plotrix</requirement>
94 <requirement type="package" version="1.14.0">bioconductor-sushi</requirement> 94 <requirement type="package" version="1.14.0">bioconductor-sushi</requirement>
95 <requirement type="package" version="1.1_2">r-colorbrewer</requirement> 95 <requirement type="package" version="1.1_2">r-rcolorbrewer</requirement>
96 <requirement type="package" version="1.0.1">r-ggplot2</requirement> 96 <requirement type="package" version="1.0.1">r-ggplot2</requirement>
97 </requirements> 97 </requirements>
98 98
99 <inputs> 99 <inputs>
100 <param format="fastqsanger" name="first_input" type="data" label="fastqsanger (Q33)" help=""/> 100 <param format="fastqsanger" name="first_input" type="data" label="fastqsanger (Q33)" help=""/>