Mercurial > repos > brasset_jensen > srnapipe
comparison sRNAPipe.xml @ 45:263819fdda14 draft
Uploaded
| author | pierre.pouchin |
|---|---|
| date | Thu, 06 Sep 2018 10:21:30 -0400 |
| parents | 221ea7307999 |
| children | 20547000266a |
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| 44:221ea7307999 | 45:263819fdda14 |
|---|---|
| 84 <requirement type="package" version="0.7.12">bwa</requirement> | 84 <requirement type="package" version="0.7.12">bwa</requirement> |
| 85 <requirement type="package" version="2.24">bedtools</requirement> | 85 <requirement type="package" version="2.24">bedtools</requirement> |
| 86 <requirement type="package" version="1.2">samtools</requirement> | 86 <requirement type="package" version="1.2">samtools</requirement> |
| 87 <requirement type="package" version="3.2.1">R</requirement> | 87 <requirement type="package" version="3.2.1">R</requirement> |
| 88 <requirement type="package" version="5.18.1">perl</requirement> | 88 <requirement type="package" version="5.18.1">perl</requirement> |
| 89 <requirement type="package" version="2.50">perl-getopt-long</requirement> | |
| 90 <requirement type="package" version="1.19">perl-parallel-forkmanager</requirement> | |
| 91 <requirement type="package" version="0.34" >perl-statistics-r</requirement> | |
| 92 <requirement type="package" version="0.29">perl-string-random</requirement> | |
| 93 <requirement type="package" version="3.6">r-plotrix</requirement> | |
| 94 <requirement type="package" version="1.14.0">bioconductor-sushi</requirement> | |
| 95 <requirement type="package" version="1.1_2">r-colorbrewer</requirement> | |
| 96 <requirement type="package" version="1.0.1">r-ggplot2</requirement> | |
| 89 </requirements> | 97 </requirements> |
| 90 | 98 |
| 91 <inputs> | 99 <inputs> |
| 92 <param format="fastqsanger" name="first_input" type="data" label="fastqsanger (Q33)" help=""/> | 100 <param format="fastqsanger" name="first_input" type="data" label="fastqsanger (Q33)" help=""/> |
| 93 <repeat name="input_files" title="Additional Fastq Files"> | 101 <repeat name="input_files" title="Additional Fastq Files"> |