Mercurial > repos > brasset_jensen > srnapipe

comparison tool_dependencies.xml @ 11:2ac343502096 draft

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author brasset_jensen
date Wed, 20 Dec 2017 10:07:50 -0500
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children ba6cb35ed623
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10:5147682da025 11:2ac343502096
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="bwa" version="0.7.12">
4 <repository changeset_revision="dcae4134cd62" name="package_bwa_0_7_12" owner="avowinkel" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="bedtools" version="2.24">
7 <repository changeset_revision="3416a1d4a582" name="package_bedtools_2_24" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package>
9 <package name="samtools" version="1.2">
10 <repository changeset_revision="f6ae3ba3f3c1" name="package_samtools_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
11 </package>
12 <package name="R" version="3.1.2">
13 <repository changeset_revision="d9f7d84125b7" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
14 </package>
15 <package name="Perl" version="5.18">
16 <repository changeset_revision="35f117d7396b" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
17 </package>
18 <package name="srnapipe" version="0.0.1">
19 <install version="1.0">
20 <actions>
21 <action type="setup_r_environment">
22 <repository changeset_revision="d9f7d84125b7" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
23 <package name="R" version="3.1.2" />
24 </repository>
25 <package>https://depot.galaxyproject.org/software/plotrix/plotrix_3.6_src_all.tar.gz</package>
26 <package>https://depot.galaxyproject.org/software/bioconductor-sushi/bioconductor-sushi_1.14.0_src_all.tar.gz</package>
27 <package>https://depot.galaxyproject.org/software/RColorBrewer/RColorBrewer_1.1-2_src_all.tar.gz</package>
28 <package>https://depot.galaxyproject.org/software/ggplot2/ggplot2_1.0.1_src_all.tar.gz</package>
29 </action>
30 </actions>
31 </install>
32 </package>
33 <package name="srnapipe" version="0.0.1">
34 <install version="1.0">
35 <actions>
36 <action type="setup_perl_environment">
37 <repository changeset_revision="35f117d7396b" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
38 <package name="Perl" version="5.18" />
39 </repository>
40 <package>https://depot.galaxyproject.org/software/perl-statistics-r/perl-statistics-r_0.34_src_all.tar.gz</package>
41 <package>https://cpan.metacpan.org/authors/id/Y/YA/YANICK/Parallel-ForkManager-1.19.tar.gz</package>
42 <package>https://cpan.metacpan.org/authors/id/F/FA/FANGLY/Statistics-R-0.34.tar.gz</package>
43 <package>https://cpan.metacpan.org/authors/id/J/JV/JV/Getopt-Long-2.50.tar.gz</package>
44 <package>https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/String-Random-0.29.tar.gz</package>
45 </action>
46 </actions>
47 </install>
48 </package>
49 </tool_dependency>