Mercurial > repos > brasset_jensen > srnapipe

comparison sRNAPipe.xml @ 72:b140b740f828 draft

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"planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit e90f8c18f63f21f99b1a0fc9c381290f3fd31e16"
author brasset_jensen
date Tue, 30 Jun 2020 06:38:36 -0400
parents 71d5983dd41e
children e19192b12af7
comparison
equal deleted inserted replaced
71:71d5983dd41e 72:b140b740f828
88 --snRNAs '$snrnas.snrnas.source.file' 88 --snRNAs '$snrnas.snrnas.source.file'
89 --build_snRNAs 89 --build_snRNAs
90 #else 90 #else
91 --snRNAs '$snrnas.snrnas.source.indices.fields.path' 91 --snRNAs '$snrnas.snrnas.source.indices.fields.path'
92 #end if 92 #end if
93 #else
94 --snRNAs "None"
93 #end if 95 #end if
94 96
95 #if str($rrnas.rrnas.use_ref) == 'true' 97 #if str($rrnas.rrnas.use_ref) == 'true'
96 #if str($rrnas.rrnas.source.source) == "history" 98 #if str($rrnas.rrnas.source.source) == "history"
97 --rRNAs '$rrnas.rrnas.source.file' 99 --rRNAs '$rrnas.rrnas.source.file'
98 --build_rRNAs 100 --build_rRNAs
99 #else 101 #else
100 --rRNAs '$rrnas.rrnas.source.indices.fields.path' 102 --rRNAs '$rrnas.rrnas.source.indices.fields.path'
101 #end if 103 #end if
104 #else
105 --rRNAs "None"
102 #end if 106 #end if
103 107
104 #if str($trnas.trnas.use_ref) == 'true' 108 #if str($trnas.trnas.use_ref) == 'true'
105 #if str($trnas.trnas.source.source) == "history" 109 #if str($trnas.trnas.source.source) == "history"
106 --tRNAs '$trnas.trnas.source.file' 110 --tRNAs '$trnas.trnas.source.file'
107 --build_tRNAs 111 --build_tRNAs
108 #else 112 #else
109 --tRNAs '$trnas.trnas.source.indices.fields.path' 113 --tRNAs '$trnas.trnas.source.indices.fields.path'
110 #end if 114 #end if
115 #else
116 --tRNAs "None"
111 #end if 117 #end if
112 118
113 --si_min $sirna.si_min 119 --si_min $sirna.si_min
114 --si_max $sirna.si_max 120 --si_max $sirna.si_max
115 --pi_min $pirna.pi_min 121 --pi_min $pirna.pi_min