Mercurial > repos > brasset_jensen > srnapipe

comparison sRNAPipe.xml @ 30:b3f0209d3fec draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author brasset_jensen
date Sun, 27 May 2018 16:52:58 -0400
parents 9f6ece278d09
children 1198596f624f
comparison
equal deleted inserted replaced
29:e10a2311e293 30:b3f0209d3fec
79 --html $html_out 79 --html $html_out
80 --PPPon $PPPon 80 --PPPon $PPPon
81 </command> 81 </command>
82 82
83 <requirements> 83 <requirements>
84 <requirement type="package" version="0.7.15">bwa</requirement> 84 <requirement type="package" version="0.7.12">bwa</requirement>
85 <requirement type="package" version="2.26.0">bedtools</requirement> 85 <requirement type="package" version="2.24">bedtools</requirement>
86 <requirement type="package" version="1.5">samtools</requirement> 86 <requirement type="package" version="1.2">samtools</requirement>
87 </requirements> 87 </requirements>
88 88
89 <inputs> 89 <inputs>
90 <param format="fastqsanger" name="first_input" type="data" label="fastqsanger (Q33)" help=""/> 90 <param format="fastqsanger" name="first_input" type="data" label="fastqsanger (Q33)" help=""/>
91 <repeat name="input_files" title="Additional Fastq Files"> 91 <repeat name="input_files" title="Additional Fastq Files">
231 <collection format ="fastqsanger" type="list" label="${tool.name}_fastq_outputs" name="output_fastqsanger"> 231 <collection format ="fastqsanger" type="list" label="${tool.name}_fastq_outputs" name="output_fastqsanger">
232 <discover_datasets format ="fastqsanger" pattern="(?P&lt;name&gt;.*)" directory="fastq_dir" /> 232 <discover_datasets format ="fastqsanger" pattern="(?P&lt;name&gt;.*)" directory="fastq_dir" />
233 </collection> 233 </collection>
234 234
235 </outputs> 235 </outputs>
236 <help>
237 <![CDATA[
238 **User manual**
239 .. image:: sRNAPipe_User_Manual.pdf
240 @REFERENCES@
241 ]]>
242
243 </help>
236 </tool> 244 </tool>