Mercurial > repos > brasset_jensen > srnapipe

comparison sRNAPipe.xml @ 52:b62dc0435760 draft

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Uploaded
author pierre.pouchin
date Thu, 06 Sep 2018 11:59:18 -0400
parents 1d7d33c46375
children c9fa369b0b79
comparison
equal deleted inserted replaced
51:1d7d33c46375 52:b62dc0435760
1 <tool id="sRNAPipe" name="sRNAPipe" version="1.0"> 1 <tool id="sRNAPipe" name="sRNAPipe" version="0.0.1">
2 <description>In-depth study of small RNA</description> 2 <description>In-depth study of small RNA</description>
3 <command interpreter="perl"> 3 <command interpreter="perl">
4 4
5 ./bin/sRNAPipe.pl 5 ./bin/sRNAPipe.pl
6 6
82 82
83 <requirements> 83 <requirements>
84 <requirement type="package" version="0.7.12">bwa</requirement> 84 <requirement type="package" version="0.7.12">bwa</requirement>
85 <requirement type="package" version="2.24">bedtools</requirement> 85 <requirement type="package" version="2.24">bedtools</requirement>
86 <requirement type="package" version="1.2">samtools</requirement> 86 <requirement type="package" version="1.2">samtools</requirement>
87 <requirement type="package" version="3.2.1">R</requirement> 87 <requirement type="package" version="3.3.2">r-base</requirement>
88 <requirement type="package" version="5.18.1">perl</requirement> 88 <requirement type="package" version="5.20.3.1">perl</requirement>
89 <requirement type="package" version="2.50">perl-getopt-long</requirement>
90 <requirement type="package" version="1.19">perl-parallel-forkmanager</requirement>
91 <requirement type="package" version="0.34" >perl-statistics-r</requirement>
92 <requirement type="package" version="0.29">perl-string-random</requirement>
93 <requirement type="package" version="3.6">r-plotrix</requirement>
94 <requirement type="package" version="1.14.0">bioconductor-sushi</requirement>
95 <requirement type="package" version="1.1_2">r-colorbrewer</requirement>
96 <requirement type="package" version="1.0.1">r-ggplot2</requirement>
89 </requirements> 97 </requirements>
90 98
91 <inputs> 99 <inputs>
92 <param format="fastqsanger" name="first_input" type="data" label="fastqsanger (Q33)" help=""/> 100 <param format="fastqsanger" name="first_input" type="data" label="fastqsanger (Q33)" help=""/>
93 <repeat name="input_files" title="Additional Fastq Files"> 101 <repeat name="input_files" title="Additional Fastq Files">