Mercurial > repos > brasset_jensen > srnapipe

comparison sRNAPipe.xml @ 33:c1a5c5205b24 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author brasset_jensen
date Fri, 01 Jun 2018 18:17:59 -0400
parents e70d58319eaa
children 4bc00caa60b4
comparison
equal deleted inserted replaced
32:e70d58319eaa 33:c1a5c5205b24
78 --dir $html_out.files_path 78 --dir $html_out.files_path
79 --html $html_out 79 --html $html_out
80 --PPPon $PPPon 80 --PPPon $PPPon
81 </command> 81 </command>
82 82
83 <requirements> 83 <requirements>
84 <requirement type="package" version="0.7.12">bwa</requirement> 84 <requirement type="package" version="0.7.15">bwa</requirement>
85 <requirement type="package" version="2.24">bedtools</requirement> 85 <requirement type="package" version="2.26.0">bedtools</requirement>
86 <requirement type="package" version="1.2">samtools</requirement> 86 <requirement type="package" version="1.5">samtools</requirement>
87 </requirements> 87 </requirements>
88 88
89 <inputs> 89 <inputs>
90 <param format="fastqsanger" name="first_input" type="data" label="fastqsanger (Q33)" help=""/> 90 <param format="fastqsanger" name="first_input" type="data" label="fastqsanger (Q33)" help=""/>
91 <repeat name="input_files" title="Additional Fastq Files"> 91 <repeat name="input_files" title="Additional Fastq Files">
92 <param format="fastqsanger" name="additional_input" type="data" label="fastqsanger (Q33)" help=""/> 92 <param format="fastqsanger" name="additional_input" type="data" label="fastqsanger (Q33)" help=""/>
231 <collection format ="fastqsanger" type="list" label="${tool.name}_fastq_outputs" name="output_fastqsanger"> 231 <collection format ="fastqsanger" type="list" label="${tool.name}_fastq_outputs" name="output_fastqsanger">
232 <discover_datasets format ="fastqsanger" pattern="(?P&lt;name&gt;.*)" directory="fastq_dir" /> 232 <discover_datasets format ="fastqsanger" pattern="(?P&lt;name&gt;.*)" directory="fastq_dir" />
233 </collection> 233 </collection>
234 234
235 </outputs> 235 </outputs>
236 <help>
237 **User manual**
238 "https://github.com/brassetjensen/sRNAPipe/blob/master/sRNAPipe_User_Manual.pdf"
239 </help>
236 </tool> 240 </tool>