Mercurial > repos > brasset_jensen > srnapipe

comparison sRNAPipe.xml @ 73:e19192b12af7 draft

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"planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit d0d6dce993374eab03ba61c3fa99963f454ea48c"
author brasset_jensen
date Thu, 26 Aug 2021 11:20:45 +0000
parents b140b740f828
children fe3a93edb210
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72:b140b740f828 73:e19192b12af7
1 <tool id="sRNAPipe" name="sRNAPipe" version="1.1.1"> 1 <tool id="sRNAPipe" name="sRNAPipe" version="1.1.2">
2 <description>In-depth study of small RNA</description> 2 <description>In-depth study of small RNA</description>
3 <macros> 3 <macros>
4 <xml name="source" token_arg="Argument" token_build="Build argument" token_ref=""> 4 <xml name="source" token_arg="Argument" token_build="Build argument" token_ref="">
5 <conditional name="source"> 5 <conditional name="source">
6 <param name="source" type="select" label="Will you select the reference database from your history or use a built-in index?"> 6 <param name="source" type="select" label="Will you select the reference database from your history or use a built-in index?">
121 --pi_min $pirna.pi_min 121 --pi_min $pirna.pi_min
122 --pi_max $pirna.pi_max 122 --pi_max $pirna.pi_max
123 --dir $html_out.files_path 123 --dir $html_out.files_path
124 --html $html_out 124 --html $html_out
125 --PPPon $PPPon 125 --PPPon $PPPon
126 --threads '\${GALAXY_SLOTS:-4}' 126 --threads \${GALAXY_SLOTS:-4}
127 ]]> 127 ]]>
128 </command> 128 </command>
129 <inputs> 129 <inputs>
130 <conditional name="inputs"> 130 <conditional name="inputs">
131 <param name="custom" type="select" label="Use custom name for the input sequence files?"> 131 <param name="custom" type="select" label="Use custom name for the input sequence files?">