Mercurial > repos > brasset_jensen > srnapipe
comparison sRNAPipe.xml @ 73:e19192b12af7 draft
"planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit d0d6dce993374eab03ba61c3fa99963f454ea48c"
author | brasset_jensen |
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date | Thu, 26 Aug 2021 11:20:45 +0000 |
parents | b140b740f828 |
children | fe3a93edb210 |
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72:b140b740f828 | 73:e19192b12af7 |
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1 <tool id="sRNAPipe" name="sRNAPipe" version="1.1.1"> | 1 <tool id="sRNAPipe" name="sRNAPipe" version="1.1.2"> |
2 <description>In-depth study of small RNA</description> | 2 <description>In-depth study of small RNA</description> |
3 <macros> | 3 <macros> |
4 <xml name="source" token_arg="Argument" token_build="Build argument" token_ref=""> | 4 <xml name="source" token_arg="Argument" token_build="Build argument" token_ref=""> |
5 <conditional name="source"> | 5 <conditional name="source"> |
6 <param name="source" type="select" label="Will you select the reference database from your history or use a built-in index?"> | 6 <param name="source" type="select" label="Will you select the reference database from your history or use a built-in index?"> |
121 --pi_min $pirna.pi_min | 121 --pi_min $pirna.pi_min |
122 --pi_max $pirna.pi_max | 122 --pi_max $pirna.pi_max |
123 --dir $html_out.files_path | 123 --dir $html_out.files_path |
124 --html $html_out | 124 --html $html_out |
125 --PPPon $PPPon | 125 --PPPon $PPPon |
126 --threads '\${GALAXY_SLOTS:-4}' | 126 --threads \${GALAXY_SLOTS:-4} |
127 ]]> | 127 ]]> |
128 </command> | 128 </command> |
129 <inputs> | 129 <inputs> |
130 <conditional name="inputs"> | 130 <conditional name="inputs"> |
131 <param name="custom" type="select" label="Use custom name for the input sequence files?"> | 131 <param name="custom" type="select" label="Use custom name for the input sequence files?"> |