Mercurial > repos > brasset_jensen > srnapipe

comparison sRNAPipe.xml @ 59:eeb89c3331ad draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Undo last upload.
author pierre.pouchin
date Tue, 23 Oct 2018 11:02:17 -0400
parents e12ad81abcbb
children 9645d995fb3c
comparison
equal deleted inserted replaced
58:e12ad81abcbb 59:eeb89c3331ad
3 <command interpreter="perl"> 3 <command interpreter="perl">
4 4
5 ./bin/sRNAPipe.pl 5 ./bin/sRNAPipe.pl
6 6
7 --fastq ${first_input} 7 --fastq ${first_input}
8 --fastq_n "${first_input.name}" 8 --fastq_n ${first_input.name}
9 #for $input_file in $input_files: 9 #for $input_file in $input_files:
10 --fastq ${input_file.additional_input} 10 --fastq ${input_file.additional_input}
11 --fastq_n "${input_file.additional_input.name}" 11 --fastq_n ${input_file.additional_input.name}
12 #end for 12 #end for
13 13
14 #if $Genome.refGenomeSource == "history": 14 #if $Genome.refGenomeSource == "history":
15 --ref "${Genome.ownFile}" 15 --ref "${Genome.ownFile}"
16 --build_index 16 --build_index