--- a/test-data/fastq_dir/reads-sample-small.fastq-miRNAs-genome_uni.fastq	Thu Jan 17 09:56:52 2019 -0500
+++ b/test-data/fastq_dir/reads-sample-small.fastq-miRNAs-genome_uni.fastq	Thu Jan 24 13:09:46 2019 -0500
@@ -1,207 +1,23 @@
-@HWI-ST132:678:C1LFKACXX:6:1103:6450:33284
-AACCCGTAAATCCGAACTTG
-+
-?@@DD<@DCCABFGF1@GHI
-@HWI-ST132:678:C1LFKACXX:6:1104:7735:58473
-AACCCGTAAATCCGAACTTG
-+
-:?@DDDDD@<2CAEFHGGIC
-@HWI-ST132:678:C1LFKACXX:6:1111:8344:28118
-AACCCGTAAATCCGAACTTG
-+
-?@@DDADD@B<ADCAEEGGI
-@HWI-ST132:678:C1LFKACXX:6:1201:4901:28957
-AACCCGTAAATCCGAACTTG
-+
-@@@FFFFFDAAFHFHGIIJH
-@HWI-ST132:678:C1LFKACXX:6:1201:14858:55180
-AACCCGTAAATCCGAACTTG
-+
-?B@FDFFFCAHAFGFHIJJJ
-@HWI-ST132:678:C1LFKACXX:6:1208:10957:88261
-AACCCGTAAATCCGAACTTG
-+
-@@@FFFDDFFFDFCE+CFHI
 @HWI-ST132:678:C1LFKACXX:6:1211:4119:82063
 AACCCGTAAATCCGAACTTG
 +
 B?@FFFDF@AACFFAEHHJI
-@HWI-ST132:678:C1LFKACXX:6:1301:7756:37290
-AACCCGTAAATCCGAACTTG
-+
-=BBDFFFF@<ADFHEGIJJI
-@HWI-ST132:678:C1LFKACXX:6:1315:14080:19805
-AACCCGTAAATCCGAACTTG
-+
-?@?DDDDFFDDHHJI;EGIE
-@HWI-ST132:678:C1LFKACXX:6:2106:14523:50358
-AACCCGTAAATCCGAACTTG
-+
-BBBFFFFFH:<ADHGIJJJJ
-@HWI-ST132:678:C1LFKACXX:6:2107:6396:35457
-AACCCGTAAATCCGAACTTG
-+
-:?BDFFFF<><ADFHIJJJJ
-@HWI-ST132:678:C1LFKACXX:6:1106:15354:26782
-AACCCGTAAATCCGAACTTGTG
-+
-BB@DFFDFCAADHGIGGHIII?
-@HWI-ST132:678:C1LFKACXX:6:1206:3893:47334
-AACCCGTAAATCCGAACTTGTG
-+
-?@@F@D@DDDDFHGIBCCHEAB
-@HWI-ST132:678:C1LFKACXX:6:1212:8247:60863
-AACCCGTAAATCCGAACTTGTG
-+
-?@@FFFDDCA?DFIIGEEHIGH
-@HWI-ST132:678:C1LFKACXX:6:2103:20330:81235
-AACCCGTAAATCCGAACTTGTG
-+
-=?BDFFFF<<<<D<CEHIJHAF
-@HWI-ST132:678:C1LFKACXX:6:2105:18756:21094
-AACCCGTAAATCCGAACTTGTG
-+
-CCCFFFFFHFHHHJJJJJJJII
-@HWI-ST132:678:C1LFKACXX:6:2108:11590:68948
-AACCCGTAAATCCGAACTTGTG
-+
-=?@;DDDD@<ACDGFHHEHAEE
-@HWI-ST132:678:C1LFKACXX:6:2109:7213:21129
-AACCCGTAAATCCGAACTTGTG
-+
-:B@DFFFF<<<ADBGEFFHIFH
 @HWI-ST132:678:C1LFKACXX:6:1113:9515:60678
 CAAGACCGGCATTATGGGAGTC
 +
 ?@;DDFFFDFCFHJJGA8CGEH
-@HWI-ST132:678:C1LFKACXX:6:1211:4033:43798
-CAAGACCGGCATTATGGGAGTC
-+
-@CCFFFFFHHHHHJGHIJIJFH
-@HWI-ST132:678:C1LFKACXX:6:2102:15781:17798
-CAAGACCGGCATTATGGGAGTC
-+
-??@DDDDDFFDFFEH<CED:11
-@HWI-ST132:678:C1LFKACXX:6:2105:13568:17777
-CAAGACCGGCATTATGGGAGTC
-+
-@BBFBDDD<CFHHHHAGHIJGH
-@HWI-ST132:678:C1LFKACXX:6:1116:7415:45912
-TCCCTGAGACCCTAACTTGTG
-+
-=?1=ABDDHHGHGICFCEIFF
-@HWI-ST132:678:C1LFKACXX:6:1312:17503:22366
-TCCCTGAGACCCTAACTTGTG
-+
-@@?DFFFFBHHGHIIIJIGHG
 @HWI-ST132:678:C1LFKACXX:6:1101:13208:32198
 TCCCTGAGACCCTAACTTGTGA
 +
 CCCFFFEFFHHHHIJJIIJHHI
-@HWI-ST132:678:C1LFKACXX:6:1102:17974:5349
-TCCCTGAGACCCTAACTTGTGA
-+
-CCCFFFDFHGHHHGIJJJJHGI
-@HWI-ST132:678:C1LFKACXX:6:1105:10525:58469
-TCCCTGAGACCCTAACTTGTGA
-+
-B@CFFFDDDHFHGHIIIGHHIJ
-@HWI-ST132:678:C1LFKACXX:6:1106:11675:95913
-TCCCTGAGACCCTAACTTGTGA
-+
-@@@DDDDDFHHHHAFH?G+AFH
 @HWI-ST132:678:C1LFKACXX:6:1107:11700:11209
 TCCCTGAGACCCTAACTTGTGA
 +
 ?@@DD;==DHFDCGCFEDHHHE
-@HWI-ST132:678:C1LFKACXX:6:1109:4618:19903
-TCCCTGAGACCCTAACTTGTGA
-+
-CCCFFFFFHHHHHCGGHIJEHH
-@HWI-ST132:678:C1LFKACXX:6:1111:16886:54124
-TCCCTGAGACCCTAACTTGTGA
-+
-CCCFFFFFHHHHHEHIJJFHIJ
-@HWI-ST132:678:C1LFKACXX:6:1113:14917:12939
-TCCCTGAGACCCTAACTTGTGA
-+
-CCCFFFFFHHHHHJJJJJIAGH
-@HWI-ST132:678:C1LFKACXX:6:1113:15286:60745
-TCCCTGAGACCCTAACTTGTGA
-+
-@@@FFFDD2ADFFBHCGGAHHI
-@HWI-ST132:678:C1LFKACXX:6:1116:10143:61594
-TCCCTGAGACCCTAACTTGTGA
-+
-@B=DDFFFHHHHHIHIJJJHIH
 @HWI-ST132:678:C1LFKACXX:6:1201:12358:31858
 TCCCTGAGACCCTAACTTGTGA
 +
 :BBFFF24>ADHHIJJJJHAFH
-@HWI-ST132:678:C1LFKACXX:6:1207:19763:6169
-TCCCTGAGACCCTAACTTGTGA
-+
-CCCFFFFFHHHHHGIJIJEHHI
-@HWI-ST132:678:C1LFKACXX:6:1208:17227:84730
-TCCCTGAGACCCTAACTTGTGA
-+
-CCCFFFFFHHHGHGHIJIH<CH
-@HWI-ST132:678:C1LFKACXX:6:1209:14006:3385
-TCCCTGAGACCCTAACTTGTGA
-+
-CCCFFFFFFHHHHEHGHHIFGF
-@HWI-ST132:678:C1LFKACXX:6:1212:19731:4329
-TCCCTGAGACCCTAACTTGTGA
-+
-CCCFFFFFHHHHHJIHIIJHHI
-@HWI-ST132:678:C1LFKACXX:6:1212:8981:55837
-TCCCTGAGACCCTAACTTGTGA
-+
-@@@D?EFDFFHHHJJIBEGAFC
-@HWI-ST132:678:C1LFKACXX:6:1214:16337:65541
-TCCCTGAGACCCTAACTTGTGA
-+
-BC?DDFFFGHHHFIIJJIIFGG
-@HWI-ST132:678:C1LFKACXX:6:1214:9263:76030
-TCCCTGAGACCCTAACTTGTGA
-+
-@@@FFFFFHFHDHEEHIIHAFH
-@HWI-ST132:678:C1LFKACXX:6:1215:7321:50488
-TCCCTGAGACCCTAACTTGTGA
-+
-@C@DDFDDFFHBDHIIBE@FEH
-@HWI-ST132:678:C1LFKACXX:6:1302:17139:90749
-TCCCTGAGACCCTAACTTGTGA
-+
-CCCFFFFFHHHGHGIJHIIHHI
-@HWI-ST132:678:C1LFKACXX:6:1302:8853:99407
-TCCCTGAGACCCTAACTTGTGA
-+
-B@BFFFFFHFHHHBFHHIHAFH
-@HWI-ST132:678:C1LFKACXX:6:1304:2649:24602
-TCCCTGAGACCCTAACTTGTGA
-+
-CCCFFFFDHHHHHGHIJJJFGI
-@HWI-ST132:678:C1LFKACXX:6:1304:17263:52290
-TCCCTGAGACCCTAACTTGTGA
-+
-@CCFFFFFDHHHH@GIIIIHHI
-@HWI-ST132:678:C1LFKACXX:6:1312:12615:9458
-TCCCTGAGACCCTAACTTGTGA
-+
-CCCFFFFFGHHHH@FIJIF<CH
-@HWI-ST132:678:C1LFKACXX:6:1314:17779:75206
-TCCCTGAGACCCTAACTTGTGA
-+
-CCCFFFFFGHHHHEHJJJJFHJ
-@HWI-ST132:678:C1LFKACXX:6:1315:9929:42151
-TCCCTGAGACCCTAACTTGTGA
-+
-@@@DDF?D8FHHHGHHIIJEGI
-@HWI-ST132:678:C1LFKACXX:6:2103:13958:97727
-TCCCTGAGACCCTAACTTGTGA
-+
-@CCFFFFF<FHHHIIJJJJHHJ
 @HWI-ST132:678:C1LFKACXX:6:2104:10613:2992
 TCCCTGAGACCCTAACTTGTGA
 +
@@ -210,14 +26,6 @@
 TCCCTGAGACCCTAACTTGTGA
 +
 CCCFFFFFHHHHHJJIIIICGI
-@HWI-ST132:678:C1LFKACXX:6:2106:15768:75632
-TCCCTGAGACCCTAACTTGTGA
-+
-CCCFFFFFFHHHHJJJJJ4CFH
-@HWI-ST132:678:C1LFKACXX:6:2109:16865:57940
-TCCCTGAGACCCTAACTTGTGA
-+
-CCCFFFFFHHHHHIIIJJ<FHH
 @HWI-ST132:678:C1LFKACXX:6:2109:18750:76156
 TCCCTGAGACCCTAACTTGTGA
 +
@@ -226,27 +34,3 @@
 TCCCTGAGACCCTAACTTGTGACT
 +
 CCCFFFFFGHHHHJJJJI:AFHIJ
-@HWI-ST132:678:C1LFKACXX:6:1113:14924:44339
-CCCTGAGACCCTAACTTGTGAC
-+
-??@DD;B?DDFHBED?CHGHII
-@HWI-ST132:678:C1LFKACXX:6:1107:1375:15117
-TCACAAGTTTTGATCTCCGGTAT
-+
-=??D:2A2=?DDCEHBHIJICCG
-@HWI-ST132:678:C1LFKACXX:6:2105:17358:56431
-CACAAGTTTTGATCTCCGGTAT
-+
-@@@DADDDHH>FHGIGEB@<@F
-@HWI-ST132:678:C1LFKACXX:6:1102:6534:83469
-ACAAGTTTTGATCTCCGGTAT
-+
-@@CDDDDFHHHHHJJIJJHGI
-@HWI-ST132:678:C1LFKACXX:6:1212:17825:83469
-ACAAGTTTTGATCTCCGGTAT
-+
-@@@FFFFFHHDFHIJJJIFDH
-@HWI-ST132:678:C1LFKACXX:6:1304:1702:48389
-ACAAGTTTTGATCTCCGGTAT
-+
-@@@B?=DDHDGFFIIIGGF>E