--- a/test-data/res_files/reads-sample-small.fastq/subgroups/PPPartners/DMCR1A/antisens.txt	Thu Jan 17 09:56:52 2019 -0500
+++ b/test-data/res_files/reads-sample-small.fastq/subgroups/PPPartners/DMCR1A/antisens.txt	Thu Jan 24 13:09:46 2019 -0500
@@ -1,230 +1,62 @@
 >6|16|DMCR1A|1
 AAAAACACGACCGTTCGCTTTGAAA
->65|16|DMCR1A|1
-AAGATTATTAAAAACCACTGCTG
->341|16|DMCR1A|1
-ACCGCACGAGAGCAGTCTGCACGCT
->341|16|DMCR1A|1
-AACCGCACGAGAGCAGTCTGCACGCT
->541|16|DMCR1A|1
-TTCGGCCATTAAAACCAGCGCACT
->546|16|DMCR1A|1
-TCACTCGTTCGGCCATTAAAACCAGC
->550|16|DMCR1A|1
-TCATCACTCGTTCGGCCATTAAAAC
->558|16|DMCR1A|2
-TGCTAGGTCATCACTCGTTCGGCC
->662|16|DMCR1A|1
-GTTGATCAGTTCTTTCAAGCCACCT
->703|16|DMCR1A|2
-TCATCGGCTCGACGGAAACAATCTC
->705|16|DMCR1A|2
-TATCATCGGCTCGACGGAAACAATC
->733|16|DMCR1A|2
-TAAACTGTGAATTAAGCGCGCACA
->734|16|DMCR1A|2
-TTAAACTGTGAATTAAGCGCGCAC
->774|16|DMCR1A|1
-TTTTTTGATCTTTGGAGATTTATC
->861|16|DMCR1A|1
-TTGCTGCGATTGACAGCTGATCAGT
->867|16|DMCR1A|1
-TGCGGATTTGCTGCGATTGACAGCTG
->868|16|DMCR1A|1
-TGCGGATTTGCTGCGATTGACAGCT
->869|16|DMCR1A|1
-TGCGGATTTGCTGCGATTGACAGC
->869|16|DMCR1A|4
-TATGCGGATTTGCTGCGATTGACAGC
->870|16|DMCR1A|2
-TGCGGATTTGCTGCGATTGACAG
->870|16|DMCR1A|1
-TATGCGGATTTGCTGCGATTGACAG
->928|16|DMCR1A|1
-TCACAGCGAATTGATCGGATTGCT
->1024|16|DMCR1A|2
-CCTTGTGGTTGTAAACTATTCGGGA
 >1025|16|DMCR1A|1
 CCTTGTGGTTGTAAACTATTCGGG
->1026|16|DMCR1A|1
-TCCCTTGTGGTTGTAAACTATTCGG
->1056|16|DMCR1A|1
-TGCCCACTTGTGCCGGTAGACCGGACTC
->1057|16|DMCR1A|1
-CACTTGTGCCGGTAGACCGGACT
->1058|16|DMCR1A|1
-TGCCCACTTGTGCCGGTAGACCGGAC
->1058|16|DMCR1A|1
-AGTGCCCACTTGTGCCGGTAGACCGGAC
->1150|16|DMCR1A|2
+>1150|16|DMCR1A|1
 TTTGATCAGGGGAAAGCCGAGAAA
->1151|16|DMCR1A|1
-TGTTTGATCAGGGGAAAGCCGAGAA
->1152|16|DMCR1A|1
-TGTTTGATCAGGGGAAAGCCGAGA
->1175|16|DMCR1A|2
-TATATAATACAATACATCAGACGAT
->1200|16|DMCR1A|1
-TATTATCGGCTTTTGTTTTGTCTTG
->1202|16|DMCR1A|10
+>1202|16|DMCR1A|1
 TATTATCGGCTTTTGTTTTGTCT
->1210|16|DMCR1A|2
+>1210|16|DMCR1A|1
 TTCCACTTTTATATTATCGGCTTTTG
->1214|16|DMCR1A|3
-TTTTCCACTTTTATATTATCGGCT
 >1214|16|DMCR1A|1
-TTTTTCCACTTTTATATTATCGGCT
->1343|16|DMCR1A|1
-TCTTAGCTTCGAACTCTTTTACC
->1347|16|DMCR1A|1
-TTTGATCTTAGCTTCGAACTCTTT
->1348|16|DMCR1A|1
-TTTGATCTTAGCTTCGAACTCTT
+TTTTCCACTTTTATATTATCGGCT
 >1348|16|DMCR1A|1
 TTTTTGATCTTAGCTTCGAACTCTT
->1351|16|DMCR1A|2
-TATTTTTGATCTTAGCTTCGAACT
->1411|16|DMCR1A|2
-CGGATGGTGCAGTGGTCTGGCCAC
 >1413|16|DMCR1A|1
 GCGGATGGTGCAGTGGTCTGGCC
->1414|16|DMCR1A|3
+>1414|16|DMCR1A|1
 GGCGGATGGTGCAGTGGTCTGGC
 >1416|16|DMCR1A|1
 GAGGCGGATGGTGCAGTGGTCTG
->1425|16|DMCR1A|2
+>1425|16|DMCR1A|1
 GAAGATGAAGAGGCGGATGGTGC
->1538|16|DMCR1A|5
-TTATATGGGATGCAAATGAAAGACT
->1539|16|DMCR1A|1
-TTATATGGGATGCAAATGAAAGAC
->1555|16|DMCR1A|1
-TCGCTGTGAACACTATTATATGG
->1576|16|DMCR1A|3
-TAAGTATCTCCGGCTTTAACCAAGTC
->1578|16|DMCR1A|7
+>1578|16|DMCR1A|1
 TAAGTATCTCCGGCTTTAACCAAG
->1592|16|DMCR1A|1
-GAAGACTTCGGAGTTAAGTATCTC
+>1602|16|DMCR1A|1
+TACATACCTGGGAAGACTTCGGAGT
+>1603|16|DMCR1A|2
+TACATACCTGGGAAGACTTCGGAG
 >1681|16|DMCR1A|1
 TCCTCCGGCGCGAGGGTAGATCTAACC
->1753|16|DMCR1A|1
-TAAACTGAACTGTCGGAAAAAGACAGC
->1755|16|DMCR1A|1
-TAAACTGAACTGTCGGAAAAAGACA
->1756|16|DMCR1A|2
-TATAAACTGAACTGTCGGAAAAAGAC
->1757|16|DMCR1A|3
+>1757|16|DMCR1A|1
 TATAAACTGAACTGTCGGAAAAAGA
->1770|16|DMCR1A|1
-TACGAGAACGTAATATAAACTGAAC
 >1773|16|DMCR1A|1
 TATACGAGAACGTAATATAAACTG
->1783|16|DMCR1A|1
-GATGGCGGAATATACGAGAACGTA
->1800|16|DMCR1A|2
-TATTCTGGGAATTCCGAAGATGGCG
->1802|16|DMCR1A|1
-TATTCTGGGAATTCCGAAGATGG
->1805|16|DMCR1A|1
-TCTGATATTCTGGGAATTCCGAAGA
->1807|16|DMCR1A|1
-TTCTGATATTCTGGGAATTCCGAA
->1813|16|DMCR1A|5
+>1813|16|DMCR1A|1
 GATGATTCTGATATTCTGGGAAT
->1820|16|DMCR1A|2
-TAGAGGACAGATGATTCTGATATTC
->1838|16|DMCR1A|1
-TATTCAAGGTGGACTGGATAGAGGA
->1863|16|DMCR1A|3
+>1863|16|DMCR1A|2
 TACCAATTGGTCCCTGTCAGACAGTT
->1864|16|DMCR1A|1
-TACCAATTGGTCCCTGTCAGACAGT
->1864|16|DMCR1A|1
-CTACCAATTGGTCCCTGTCAGACAGT
->1865|16|DMCR1A|2
-TACCAATTGGTCCCTGTCAGACAG
->1865|16|DMCR1A|1
-CTACCAATTGGTCCCTGTCAGACAG
->1865|16|DMCR1A|2
-ACTACCAATTGGTCCCTGTCAGACAG
->1872|16|DMCR1A|6
+>1872|16|DMCR1A|1
 CCTAGAACTACCAATTGGTCCCTGT
 >1873|16|DMCR1A|1
 TCACCTAGAACTACCAATTGGTCCCTG
 >1874|16|DMCR1A|1
-CCTAGAACTACCAATTGGTCCCT
->1874|16|DMCR1A|6
 TCACCTAGAACTACCAATTGGTCCCT
->1875|16|DMCR1A|1
-CACCTAGAACTACCAATTGGTCCC
->1875|16|DMCR1A|16
+>1875|16|DMCR1A|2
 TCACCTAGAACTACCAATTGGTCCC
->1876|16|DMCR1A|1
-TCACCTAGAACTACCAATTGGTCC
->1879|16|DMCR1A|3
+>1879|16|DMCR1A|2
 TAAAATCACCTAGAACTACCAATTGG
->1882|16|DMCR1A|1
-TAAAATCACCTAGAACTACCAAT
->1883|16|DMCR1A|1
-TTAAAATCACCTAGAACTACCAA
->1884|16|DMCR1A|1
-TATATTAAAATCACCTAGAACTACCA
->1895|16|DMCR1A|2
-TTGTGCCAGGTATATTAAAATCACC
->1925|16|DMCR1A|1
-TATATTCGATTGTTTTTCTGGGGA
->1971|16|DMCR1A|1
-TAAGTCGAGCAAGCCGTCAATAAAGT
->1981|16|DMCR1A|1
-ACAACGATAAGTCGAGCAAGCCG
->1988|16|DMCR1A|1
-TTAACTTGCGACAACGATAAGTCGAG
->2100|16|DMCR1A|1
-TGATATGGATATTCAGGTTGAGTTC
->2126|16|DMCR1A|1
-TATGTCGATTGCCACCTCGAAAGTAGG
->2130|16|DMCR1A|1
-CCTATGTCGATTGCCACCTCGAAAG
->2131|16|DMCR1A|1
-TACCTATGTCGATTGCCACCTCGAAA
->2132|16|DMCR1A|1
-TACCTATGTCGATTGCCACCTCGAA
->2133|16|DMCR1A|1
-TACCTATGTCGATTGCCACCTCGA
->2153|16|DMCR1A|2
+>2153|16|DMCR1A|1
 TCTGAATTTACTTTTAATACCGTACC
->2160|16|DMCR1A|1
-ACTTCTCTGAATTTACTTTTAATA
->2161|16|DMCR1A|1
-TGACTTCTCTGAATTTACTTTTAAT
->2211|16|DMCR1A|2
-TGTTTAGCCTCCGAAAATTTGCCT
->2211|16|DMCR1A|3
+>2211|16|DMCR1A|1
 TTGTTTAGCCTCCGAAAATTTGCCT
->2335|16|DMCR1A|1
-TTGACGGATAGTACATCGGAACACAA
->2343|16|DMCR1A|1
-TTTCGAGATTGACGGATAGTACATCG
->2346|16|DMCR1A|1
-TTTCGAGATTGACGGATAGTACA
->2350|16|DMCR1A|1
-GAGGTTTCGAGATTGACGGATAG
->2350|16|DMCR1A|1
-GGAGGTTTCGAGATTGACGGATAG
 >2386|16|DMCR1A|1
 TACATTTCTTAGGTGTGTCAACTCT
->2413|16|DMCR1A|1
-TTTTTAAATTTTATATAGAGTCTGGAC
->2436|16|DMCR1A|1
-GGATGGACTGAGAACCGGTATTTT
->2437|16|DMCR1A|1
-GGATGGACTGAGAACCGGTATTT
->2442|16|DMCR1A|5
+>2430|16|DMCR1A|1
+TGGACTGAGAACCGGTATTTTTAAATT
+>2432|16|DMCR1A|3
+TGGACTGAGAACCGGTATTTTTAAA
+>2433|16|DMCR1A|2
+TGGACTGAGAACCGGTATTTTTAA
+>2442|16|DMCR1A|1
 TTACAAAGGATGGACTGAGAACCGG
->2444|16|DMCR1A|5
-TTACAAAGGATGGACTGAGAACC
->2446|16|DMCR1A|6
-TATTTACAAAGGATGGACTGAGAA
->2447|16|DMCR1A|2
-TATTTACAAAGGATGGACTGAGA