Mercurial > repos > brasset_jensen > srnapipe
diff test-data/res_files/reads-sample-small.fastq-sub.html @ 61:9185ca0a7b43 draft
Updated package according to recommendations.
| author | pierre.pouchin |
|---|---|
| date | Wed, 16 Jan 2019 08:18:13 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/res_files/reads-sample-small.fastq-sub.html Wed Jan 16 08:18:13 2019 -0500 @@ -0,0 +1,339 @@ + + <!DOCTYPE html> + <html lang="en"> + <head> + <meta charset="utf-8"> + <title>pipeline</title> + <meta name="viewport" content="width=device-width, initial-scale=1.0"> + <meta name="description" content=""> + <meta name="author" content=""> + <!-- Le styles --> + <link href="css/bootstrap.css" rel="stylesheet"> + <link href="css/bootstrap-table.css" rel="stylesheet"> + <style type="text/css"> + body { + padding-top: 60px; + padding-bottom: 40px; + } + div#page { + width: 940px; + background-color: #fff; + margin: 0 auto; + text-align: left; + border-color: #fff; + border-style: none solid solid; + border-width: medium 1px 1px; + } + + div.content { + display: none; + float: right; + width: 550px; + } + div.content a, div.navigation a { + text-decoration: none; + color: #777; + } + div.content a:focus, div.content a:hover, div.content a:active { + text-decoration: underline; + } + + div.controls { + margin-top: 5px; + height: 23px; + } + + div.controls a { + padding: 5px; + } + div.ss-controls { + float: left; + } + div.nav-controls { + float: right; + } + div.slideshow-container { + position: relative; + clear: both; + height: 502px; /* This should be set to be at least the height of the largest image in the slideshow */ + } + div.loader { + position: absolute; + top: 0; + left: 0; + background-image: url('loader.gif'); + background-repeat: no-repeat; + background-position: center; + width: 550px; + height: 502px; /* This should be set to be at least the height of the largest image in the slideshow */ + } + div.slideshow { + + } + + div.slideshow span.image-wrapper { + display: block; + position: absolute; + top: 0; + left: 0; + } + div.slideshow a.advance-link { + display: block; + width: 550px; + height: 502px; /* This should be set to be at least the height of the largest image in the slideshow */ + line-height: 502px; /* This should be set to be at least the height of the largest image in the slideshow */ + text-align: center; + } + div.slideshow a.advance-link:hover, div.slideshow a.advance-link:active, div.slideshow a.advance-link:visited { + text-decoration: none; + } + div.slideshow img { + vertical-align: middle; + border: 1px solid #ccc; + } + + div.image-title { + font-weight: bold; + font-size: 1.4em; + } + + div.image-desc { + line-height: 1.3em; + padding-top: 12px; + } + div.navigation { + + } + ul.thumbs { + clear: both; + margin: 0; + padding: 0; + } + ul.thumbs li { + float: none; + padding: 0; + margin: 0; + list-style: none; + } + a.thumb { + padding: 0; + display: inline; + border: none; + } + ul.thumbs li.selected a.thumb { + color: #000; + font-weight: bold; + } + a.thumb:focus { + outline: none; + } + ul.thumbs img { + border: none; + display: block; + } + div.pagination { + clear: both; + } + div.navigation div.top { + margin-bottom: 12px; + height: 11px; + } + div.navigation div.bottom { + margin-top: 12px; + } + div.pagination a, div.pagination span.current, div.pagination span.ellipsis { + display: block; + float: left; + margin-right: 2px; + padding: 4px 7px 2px 7px; + border: 1px solid #ccc; + } + div.pagination a:hover { + background-color: #eee; + text-decoration: none; + } + div.pagination span.current { + font-weight: bold; + background-color: #000; + border-color: #000; + color: #fff; + } + div.pagination span.ellipsis { + border: none; + padding: 5px 0 3px 2px; + } + + div.download { + float: right; + } + + div.caption-container { + position: relative; + clear: left; + height: 75px; + } + span.image-caption { + display: block; + position: absolute; + width: 550px; + top: 0; + left: 0; + } + div.caption { + padding: 12px; + } + + /* Featurettes + ------------------------- */ + + .featurette { + padding-top: 20px; /* Vertically center images part 1: add padding above and below text. */ + overflow: hidden; /* Vertically center images part 2: clear their floats. */ + text-align: center; + } + + .featurette-p + { + text-align: left; + } + + .featurette-image { + margin-top: 10px; /* Vertically center images part 3: negative margin up the image the same amount of the padding to center it. */ + width: 450px; + height: auto; + } + + </style> + <link href="css/bootstrap-responsive.css" rel="stylesheet"> + </head> + <body> + + <div class="navbar navbar-inverse navbar-fixed-top"> + <div class="navbar-inner"> + <div class="container"> + <button type="button" class="btn btn-navbar" data-toggle="collapse" data-target=".nav-collapse"> + <span class="icon-bar"></span> + <span class="icon-bar"></span> + <span class="icon-bar"></span> + </button> + <a class="brand" href="report.txt">Report</a> + <div class="nav-collapse collapse"> + <ul class="nav"> + <li class="active"><a href="reads-sample-small.fastq.html">reads-sample-small.fastq</a></li> + </ul> + </div><!--/.nav-collapse --> + </div> + </div> + </div> +<div class="container text-center"> + <div class="row-fluid"> + <div class="span6"> + <h2>Bonafide</h2> + reads of size between 18 and 29<br>with no mi, sn, t and r RNAs + <p><a class="btn" href="reads-sample-small.fastq-bonafide_reads-genome.html">Genome</a></p> + <p><a class="btn" href="reads-sample-small.fastq-bonafide_reads-TEs.html">TE</a></p> + <p><a class="btn" href="reads-sample-small.fastq-bonafide_reads-transcripts.html">Transcripts</a></p> + <div class="row-fluid"> + <div class="span6"> + <h2>siRNAs</h2> + bonafide reads of size between 21 and 21 + <p><a class="btn" href="reads-sample-small.fastq-siRNAs-genome.html">Genome</a></p> + <p><a class="btn" href="reads-sample-small.fastq-siRNAs-TEs.html">TE</a></p> + <p><a class="btn" href="reads-sample-small.fastq-siRNAs-transcripts.html">Transcripts</a></p> + </div> + <div class="span6"> + <h2>piRNAs</h2> + bonafide reads of size between 23 and 29 + <p><a class="btn" href="reads-sample-small.fastq-piRNAs-genome.html">Genome</a></p> + <p><a class="btn" href="reads-sample-small.fastq-piRNAs-TEs.html">TE</a></p> + <p><a class="btn" href="reads-sample-small.fastq-piRNAs-transcripts.html">Transcripts</a></p> + </div> + </div> + </div> + <div class="span6"> + <h2>miRNAs</h2> + <p><a class="btn" href="reads-sample-small.fastq-miRNAs-genome.html">Genome</a></p> + <p><a class="btn" href="reads-sample-small.fastq-miRNAs-TEs.html">TE</a></p> + <p><a class="btn" href="reads-sample-small.fastq-miRNAs-transcripts.html">Transcripts</a></p> + </div> + </div> +</div> + <div class="container"> <div class="row text-center"> <img src="reads-sample-small.fastq/subgroups//pie_chart.png"/><br /> + <A HREF="reads-sample-small.fastq/subgroups//repartition.txt">text file</A><br/> + </div></div> + <!-- FOOTER --> + <div class="container"> + <footer> + + </footer> + </div> + <!-- Le javascript + ================================================== --> + <!-- Placed at the end of the document so the pages load faster --> + <script type="text/javascript" src="js/filter.js"></script> + <script type="text/javascript" src="js/jquery.js"></script> + <script type="text/javascript" src="js/jquery-1.3.2.js"></script> + <script type="text/javascript" src="js/jquery.galleriffic.js"></script> + <script type="text/javascript" src="js/jquery.opacityrollover.js"></script> + <script type="text/javascript" src="js/bootstrap-table.js"></script> + <script type="text/javascript" src="js/bootstrap.min.js"></script> + <script type="text/javascript"> + jQuery(document).ready(function($) { + // We only want these styles applied when javascript is enabled + $('div.navigation').css({'width' : '300px', 'float' : 'left'}); + $('div.content').css('display', 'block'); + + $(".each-gallery").each(function(i){ + // Initially set opacity on thumbs and add + // additional styling for hover effect on thumbs + var onMouseOutOpacity = 0.67; + $('#thumbs + i + ul.thumbs li').opacityrollover({ + mouseOutOpacity: onMouseOutOpacity, + mouseOverOpacity: 1.0, + fadeSpeed: 'fast', + exemptionSelector: '.selected' + }); + + // Initialize Advanced Galleriffic Gallery + var gallery = $('#thumbs'+i).galleriffic({ + delay: 2500, + numThumbs: 22, + preloadAhead: 10, + enableTopPager: true, + enableBottomPager: true, + maxPagesToShow: 7, + imageContainerSel: '#slideshow'+ i, + controlsContainerSel: '#controls' + i, + captionContainerSel: '#caption' + i, + loadingContainerSel: '#loading' + i, + renderSSControls: true, + renderNavControls: true, + playLinkText: 'Play', + pauseLinkText: 'Pause', + prevLinkText: '‹ Previous', + nextLinkText: 'Next ›', + nextPageLinkText: 'Next ›', + prevPageLinkText: '‹ Prev', + enableHistory: false, + autoStart: false, + syncTransitions: true, + defaultTransitionDuration: 900, + onSlideChange: function(prevIndex, nextIndex) { + // 'this' refers to the gallery, which is an extension of $('#thumbs') + this.find('ul.thumbs').children() + .eq(prevIndex).fadeTo('fast', onMouseOutOpacity).end() + .eq(nextIndex).fadeTo('fast', 1.0); + }, + onPageTransitionOut: function(callback) { + this.fadeTo('fast', 0.0, callback); + }, + onPageTransitionIn: function() { + this.fadeTo('fast', 1.0); + } + }); + }); + }); + </script> + </body> + </html> + \ No newline at end of file