Mercurial > repos > brasset_jensen > srnapipe
view test-data/res_files/reads-sample-small.fastq-piRNAs-genome.html @ 72:b140b740f828 draft
"planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit e90f8c18f63f21f99b1a0fc9c381290f3fd31e16"
author | brasset_jensen |
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date | Tue, 30 Jun 2020 06:38:36 -0400 |
parents | 11708af40030 |
children |
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<!DOCTYPE html> <html lang="en"> <head> <meta charset="utf-8"> <title>pipeline</title> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="description" content=""> <meta name="author" content=""> <!-- Le styles --> <link href="css/bootstrap.css" rel="stylesheet"> <link href="css/bootstrap-table.css" rel="stylesheet"> <style type="text/css"> body { padding-top: 60px; padding-bottom: 40px; } div#page { width: 940px; background-color: #fff; margin: 0 auto; text-align: left; border-color: #fff; border-style: none solid solid; border-width: medium 1px 1px; } div.content { display: none; float: right; width: 550px; } div.content a, div.navigation a { text-decoration: none; color: #777; } div.content a:focus, div.content a:hover, div.content a:active { text-decoration: underline; } div.controls { margin-top: 5px; height: 23px; } div.controls a { padding: 5px; } div.ss-controls { float: left; } div.nav-controls { float: right; } div.slideshow-container { position: relative; clear: both; height: 502px; /* This should be set to be at least the height of the largest image in the slideshow */ } div.loader { position: absolute; top: 0; left: 0; background-image: url('loader.gif'); background-repeat: no-repeat; background-position: center; width: 550px; height: 502px; /* This should be set to be at least the height of the largest image in the slideshow */ } div.slideshow { } div.slideshow span.image-wrapper { display: block; position: absolute; top: 0; left: 0; } div.slideshow a.advance-link { display: block; width: 550px; height: 502px; /* This should be set to be at least the height of the largest image in the slideshow */ line-height: 502px; /* This should be set to be at least the height of the largest image in the slideshow */ text-align: center; } div.slideshow a.advance-link:hover, div.slideshow a.advance-link:active, div.slideshow a.advance-link:visited { text-decoration: none; } div.slideshow img { vertical-align: middle; border: 1px solid #ccc; } div.image-title { font-weight: bold; font-size: 1.4em; } div.image-desc { line-height: 1.3em; padding-top: 12px; } div.navigation { } ul.thumbs { clear: both; margin: 0; padding: 0; } ul.thumbs li { float: none; padding: 0; margin: 0; list-style: none; } a.thumb { padding: 0; display: inline; border: none; } ul.thumbs li.selected a.thumb { color: #000; font-weight: bold; } a.thumb:focus { outline: none; } ul.thumbs img { border: none; display: block; } div.pagination { clear: both; } div.navigation div.top { margin-bottom: 12px; height: 11px; } div.navigation div.bottom { margin-top: 12px; } div.pagination a, div.pagination span.current, div.pagination span.ellipsis { display: block; float: left; margin-right: 2px; padding: 4px 7px 2px 7px; border: 1px solid #ccc; } div.pagination a:hover { background-color: #eee; text-decoration: none; } div.pagination span.current { font-weight: bold; background-color: #000; border-color: #000; color: #fff; } div.pagination span.ellipsis { border: none; padding: 5px 0 3px 2px; } div.download { float: right; } div.caption-container { position: relative; clear: left; height: 75px; } span.image-caption { display: block; position: absolute; width: 550px; top: 0; left: 0; } div.caption { padding: 12px; } /* Featurettes ------------------------- */ .featurette { padding-top: 20px; /* Vertically center images part 1: add padding above and below text. */ overflow: hidden; /* Vertically center images part 2: clear their floats. */ text-align: center; } .featurette-p { text-align: left; } .featurette-image { margin-top: 10px; /* Vertically center images part 3: negative margin up the image the same amount of the padding to center it. */ width: 450px; height: auto; } </style> <link href="css/bootstrap-responsive.css" rel="stylesheet"> </head> <body> <div class="navbar navbar-inverse navbar-fixed-top"> <div class="navbar-inner"> <div class="container"> <button type="button" class="btn btn-navbar" data-toggle="collapse" data-target=".nav-collapse"> <span class="icon-bar"></span> <span class="icon-bar"></span> <span class="icon-bar"></span> </button> <a class="brand" href="report.txt">Report</a> <div class="nav-collapse collapse"> <ul class="nav"> <li class="active"><a href="reads-sample-small.fastq.html">reads-sample-small.fastq</a></li> </ul> </div><!--/.nav-collapse --> </div> </div> </div> <div class="container"> <div class="featurette"> <h1>Genome</h1> <p class="featurette-p"> <A HREF="reads-sample-small.fastq/subgroups/piRNAs//piRNAs-genome_minus.bedgraph">bedgraph minus strand</A><br/> <A HREF="reads-sample-small.fastq/subgroups/piRNAs//piRNAs-genome_plus.bedgraph">bedgraph plus strand</A><br/> <A HREF="reads-sample-small.fastq/subgroups/piRNAs//piRNAs-genome_sorted.bam">genome mappers (sorted bam)</A><br/> <A HREF="reads-sample-small.fastq/subgroups/piRNAs//piRNAs-genome_unique_minus.bedgraph">bedgraph unique minus strand</A><br/> <A HREF="reads-sample-small.fastq/subgroups/piRNAs//piRNAs-genome_unique_plus.bedgraph">bedgraph unique plus strand</A><br/> <A HREF="reads-sample-small.fastq/subgroups/piRNAs//piRNAs-genome_unique_sorted.bam">genome unique mappers (sorted bam)</A><br/> </p> </div> </div> <div id="page"> <div id="container"> <div class="each-gallery"> <div id="gallery" class="content"> <div id="controls0" class="controls"></div> <div class="slideshow-container"> <div id="loading0" class="loader"></div> <div id="slideshow0" class="slideshow"></div> </div> <div id="caption0" class="caption-container">Uniquely mapped reads</div> </div> <div id="thumbs0" class="navigation"> <input type="text" id="myInput0" onkeyup="search(this)" placeholder="Search for names..."> <ul class="thumbs noscript"> <li> <a class="thumb" href="reads-sample-small.fastq/subgroups/piRNAs//Gviz_genome/unique/chrom_1.png" title="chrom_1">chrom_1</a> </li> <li> <a class="thumb" href="reads-sample-small.fastq/subgroups/piRNAs//Gviz_genome/unique/chrom_6.png" title="chrom_6">chrom_6</a> </li> </ul> </div> </div> <div id="page"> <div id="container"> <div class="each-gallery"> <div id="gallery" class="content"> <div id="controls1" class="controls"></div> <div class="slideshow-container"> <div id="loading1" class="loader"></div> <div id="slideshow1" class="slideshow"></div> </div> <div id="caption1" class="caption-container">Reads randomly assigned</div> </div> <div id="thumbs1" class="navigation"> <input type="text" id="myInput1" onkeyup="search(this)" placeholder="Search for names..."> <ul class="thumbs noscript"> <li> <a class="thumb" href="reads-sample-small.fastq/subgroups/piRNAs//Gviz_genome/rand/chrom_1.png" title="chrom_1">chrom_1</a> </li> <li> <a class="thumb" href="reads-sample-small.fastq/subgroups/piRNAs//Gviz_genome/rand/chrom_6.png" title="chrom_6">chrom_6</a> </li> </ul> </div> <div style="clear: both;"></div></div> </div> </div> <!-- FOOTER --> <div class="container"> <footer> </footer> </div> <!-- Le javascript ================================================== --> <!-- Placed at the end of the document so the pages load faster --> <script type="text/javascript" src="js/filter.js"></script> <script type="text/javascript" src="js/jquery.js"></script> <script type="text/javascript" src="js/jquery-1.3.2.js"></script> <script type="text/javascript" src="js/jquery.galleriffic.js"></script> <script type="text/javascript" src="js/jquery.opacityrollover.js"></script> <script type="text/javascript" src="js/bootstrap-table.js"></script> <script type="text/javascript" src="js/bootstrap.min.js"></script> <script type="text/javascript"> jQuery(document).ready(function($) { // We only want these styles applied when javascript is enabled $('div.navigation').css({'width' : '300px', 'float' : 'left'}); $('div.content').css('display', 'block'); $(".each-gallery").each(function(i){ // Initially set opacity on thumbs and add // additional styling for hover effect on thumbs var onMouseOutOpacity = 0.67; $('#thumbs + i + ul.thumbs li').opacityrollover({ mouseOutOpacity: onMouseOutOpacity, mouseOverOpacity: 1.0, fadeSpeed: 'fast', exemptionSelector: '.selected' }); // Initialize Advanced Galleriffic Gallery var gallery = $('#thumbs'+i).galleriffic({ delay: 2500, numThumbs: 22, preloadAhead: 10, enableTopPager: true, enableBottomPager: true, maxPagesToShow: 7, imageContainerSel: '#slideshow'+ i, controlsContainerSel: '#controls' + i, captionContainerSel: '#caption' + i, loadingContainerSel: '#loading' + i, renderSSControls: true, renderNavControls: true, playLinkText: 'Play', pauseLinkText: 'Pause', prevLinkText: '‹ Previous', nextLinkText: 'Next ›', nextPageLinkText: 'Next ›', prevPageLinkText: '‹ Prev', enableHistory: false, autoStart: false, syncTransitions: true, defaultTransitionDuration: 900, onSlideChange: function(prevIndex, nextIndex) { // 'this' refers to the gallery, which is an extension of $('#thumbs') this.find('ul.thumbs').children() .eq(prevIndex).fadeTo('fast', onMouseOutOpacity).end() .eq(nextIndex).fadeTo('fast', 1.0); }, onPageTransitionOut: function(callback) { this.fadeTo('fast', 0.0, callback); }, onPageTransitionIn: function() { this.fadeTo('fast', 1.0); } }); }); }); </script> </body> </html>