# HG changeset patch
# User brasset_jensen
# Date 1529267574 14400
# Node ID 54cb936745567d83265edac33219f03984a9df46
# Parent  c1a5c5205b242ff1abfb5e14764310d91a133d1f
Uploaded

diff -r c1a5c5205b24 -r 54cb93674556 bin/sRNAPipe.pl
--- a/bin/sRNAPipe.pl	Fri Jun 01 18:17:59 2018 -0400
+++ b/bin/sRNAPipe.pl	Sun Jun 17 16:32:54 2018 -0400
@@ -206,7 +206,7 @@
 
 		my $ex_count_file =  $type_dir.$type_prefix.'transcripts_reads_counts.txt';
 		my ( $ex_count, $ex_ref_size ) =  sam_count ( $type_sam_transcripts );
-		rpms_rpkm( $ex_count, $ex_ref_size, $ma, $ex_count_file, $pi, $mi, $bo );
+		rpms_rpkm_te( $ex_count, $ex_ref_size, $ma, $ex_count_file, $pi, $mi, $bo );
 
 		my ( $TEs_count, $TEs_ref_size, $TEs_count_NoM, $TEs_count_M ) = sam_count_mis ( $type_sam_TEs );
 		my $TEs_count_file = $type_dir.$type_prefix.'TEs_reads_counts.txt';