Mercurial > repos > brasset_jensen > srnapipe

changeset 24:36e45a7b3eff draft

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Uploaded
author brasset_jensen
date Sun, 13 May 2018 15:53:26 -0400
parents 6669c4f79cac
children e26d3bee9348
files bin/align.pm
diffstat 1 files changed, 2 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/bin/align.pm	Sun May 13 15:46:36 2018 -0400
+++ b/bin/align.pm	Sun May 13 15:53:26 2018 -0400
@@ -303,7 +303,8 @@
         } 
         else 
         { 
-          $number{$line[2]}->[2]++ if $seq[9] eq 'A';
+          $number{$line[2]}->[2]++
+          $number{$line[2]}->[4]++ if $seq[9] eq 'A';
         } 
     	 	if ($_ =~ /.*XM:i:(\d+).*/)
     	 	{