Mercurial > repos > brasset_jensen > srnapipe

changeset 9:4878b321f851 draft

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Deleted selected files
author brasset_jensen
date Wed, 20 Dec 2017 10:07:06 -0500
parents 51c47fdc41f7
children 5147682da025
files tool_data_table_conf.xml.sample tool_data_table_conf.xml.sample tool_dependencies.xml
diffstat 3 files changed, 0 insertions(+), 63 deletions(-) [+]
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--- a/ tool_data_table_conf.xml.sample 	Wed Dec 20 09:49:33 2017 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,7 +0,0 @@
-<tables>
-    <!-- Locations of configurations -->
-    <table name="bwa_indexes" comment_char="#">
-        <columns>value, dbkey, name, path</columns>
-        <file path="tool-data/bwa_index.loc" />
-    </table>
-</tables>
\ No newline at end of file
--- a/tool_data_table_conf.xml.sample	Wed Dec 20 09:49:33 2017 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,7 +0,0 @@
-<tables>
-    <!-- Locations of configurations -->
-    <table name="bwa_indexes" comment_char="#">
-        <columns>value, dbkey, name, path</columns>
-        <file path="tool-data/bwa_index.loc" />
-    </table>
-</tables>
\ No newline at end of file
--- a/tool_dependencies.xml	Wed Dec 20 09:49:33 2017 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,49 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-  <package name="bwa" version="0.7.12">
-    <repository changeset_revision="6af9b24ddeee" name="package_bwa_0_7_12" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  </package>
-  <package name="bedtools" version="2.24">
-    <repository changeset_revision="3416a1d4a582" name="package_bedtools_2_24" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  </package>
-  <package name="samtools" version="1.2">
-    <repository changeset_revision="f6ae3ba3f3c1" name="package_samtools_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  </package>
-  <package name="R" version="3.1.2">
-    <repository changeset_revision="4d2fd1413b56" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
-  </package>
-  <package name="Perl" version="5.18">
-    <repository changeset_revision="35f117d7396b" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
-  </package>
-  <package name="srnapipe" version="0.0.1">
-    <install version="1.0">
-      <actions>
-        <action type="setup_r_environment">
-          <repository changeset_revision="4d2fd1413b56" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
-            <package name="R" version="3.1.2" />
-          </repository>
-          <package>https://depot.galaxyproject.org/software/plotrix/plotrix_3.6_src_all.tar.gz</package>
-          <package>https://depot.galaxyproject.org/software/bioconductor-sushi/bioconductor-sushi_1.14.0_src_all.tar.gz</package>
-          <package>https://depot.galaxyproject.org/software/RColorBrewer/RColorBrewer_1.1-2_src_all.tar.gz</package>
-          <package>https://depot.galaxyproject.org/software/ggplot2/ggplot2_1.0.1_src_all.tar.gz</package>
-        </action>
-      </actions>
-    </install>
-  </package>
-  <package name="srnapipe" version="0.0.1">
-    <install version="1.0">
-      <actions>
-        <action type="setup_perl_environment">
-          <repository changeset_revision="35f117d7396b" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
-            <package name="Perl" version="5.18" />
-          </repository>
-          <package>https://depot.galaxyproject.org/software/perl-statistics-r/perl-statistics-r_0.34_src_all.tar.gz</package>
-          <package>https://cpan.metacpan.org/authors/id/Y/YA/YANICK/Parallel-ForkManager-1.19.tar.gz</package>
-          <package>https://cpan.metacpan.org/authors/id/F/FA/FANGLY/Statistics-R-0.34.tar.gz</package>
-          <package>https://cpan.metacpan.org/authors/id/J/JV/JV/Getopt-Long-2.50.tar.gz</package>
-          <package>https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/String-Random-0.29.tar.gz</package>
-        </action>
-      </actions>
-    </install>
-  </package>
-</tool_dependency>