Mercurial > repos > brasset_jensen > srnapipe

changeset 36:82779d2aacdd draft

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Uploaded
author brasset_jensen
date Sun, 17 Jun 2018 16:39:58 -0400
parents 360ec0ae04c9
children 1a19772a0852
files bin/sRNAPipe.pl
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/bin/sRNAPipe.pl	Sun Jun 17 16:35:24 2018 -0400
+++ b/bin/sRNAPipe.pl	Sun Jun 17 16:39:58 2018 -0400
@@ -205,7 +205,7 @@
 		}
 
 		my $ex_count_file =  $type_dir.$type_prefix.'transcripts_reads_counts.txt';
-		my ( $ex_count, $ex_ref_size ) =  sam_count ( $type_sam_transcripts );
+		my ( $ex_count, $ex_ref_size ) =  sam_count_mis ( $type_sam_transcripts );
 		rpms_rpkm_te( $ex_count, $ex_ref_size, $ma, $ex_count_file, $pi, $mi, $bo );
 
 		my ( $TEs_count, $TEs_ref_size, $TEs_count_NoM, $TEs_count_M ) = sam_count_mis ( $type_sam_TEs );