Mercurial > repos > brasset_jensen > srnapipe

changeset 21:b80aa719069f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author brasset_jensen
date Sun, 13 May 2018 15:40:38 -0400
parents 8ea13dab3435
children 59c728d31244
files bin/sRNAPipe.pl
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/bin/sRNAPipe.pl	Sun May 13 15:40:18 2018 -0400
+++ b/bin/sRNAPipe.pl	Sun May 13 15:40:38 2018 -0400
@@ -212,9 +212,9 @@
 		my $TEs_count_file = $type_dir.$type_prefix.'TEs_reads_counts.txt';
 		my $TEs_count_file_M = $type_dir.$type_prefix.'TEs_reads_counts_mismatches.txt';
 		my $TEs_count_file_noM = $type_dir.$type_prefix.'TEs_reads_counts_nomismatches.txt';
-		rpms_rpkm( $TEs_count, $TEs_ref_size, $ma, $TEs_count_file, $pi, $mi, $bo );
-		rpms_rpkm( $TEs_count_NoM, $TEs_ref_size, $ma, $TEs_count_file_noM, $pi, $mi, $bo );
-		rpms_rpkm( $TEs_count_M, $TEs_ref_size, $ma, $TEs_count_file_M, $pi, $mi, $bo );
+		rpms_rpkm_te( $TEs_count, $TEs_ref_size, $ma, $TEs_count_file, $pi, $mi, $bo );
+		rpms_rpkm_te( $TEs_count_NoM, $TEs_ref_size, $ma, $TEs_count_file_noM, $pi, $mi, $bo );
+		rpms_rpkm_te( $TEs_count_M, $TEs_ref_size, $ma, $TEs_count_file_M, $pi, $mi, $bo );
 
 		sam_to_bam_bg ( $type_sam_TEs, $scale, $grand_child );
 		sam_sorted_bam ( $type_sam_transcripts, $grand_child ); sam_sorted_bam ( $type_sam_uni_transcripts, $grand_child );