Mercurial > repos > brigidar > sed_fasta

changeset 1:04871c6242d2 draft default tip

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Uploaded
author brigidar
date Tue, 06 Oct 2015 13:05:50 -0400
parents 80f990fb3ba6
children
files sed-fasta.xml
diffstat 1 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/sed-fasta.xml	Tue Oct 06 12:53:24 2015 -0400
+++ b/sed-fasta.xml	Tue Oct 06 13:05:50 2015 -0400
@@ -1,9 +1,9 @@
-<tool id="cat_list" name="remove leading characters in fasta downloaded from ncbi to match genbank locus tag">
-    <description>tail-to-head</description>
+<tool id="sed_fasta" name="remove leading characters in fasta downloaded from ncbi to match genbank locus tag" version="0.2">
+    <description>remove leading characters fasta file</description>
     <command>
-        cat $input1 | sed 's/gi.*gb\|//g' | sed 's/\|//g' >> $out_file1    </command>
+        cat $input1 | sed 's/gi.*gb[|]//g' | sed 's/[|]//g' >> $out_file1    </command>
     <inputs>
-        <param name="input1" type="data" label="remove gi to gb characters" multiple="true" />
+        <param name="input1" type="data" label="remove gi to gb characters" />
     </inputs>
     <outputs>
         <data name="out_file1" format="input" metadata_source="input1"/>