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4
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1 <tool id="select_product" name="select_product" version="0.3">
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3
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2 <description>define product names to sort on and flanking region</description>
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1
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3 <requirements>
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4
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5 </requirements>
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4
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6 <command interpreter="python">
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1
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7 select_product.py
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8 -g $input_file
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9 -n $number
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10 -k $keys
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11 > output_file
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12 </command>
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13
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14 <inputs>
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15 <param format="gbk" name="input_file" type="data" label="reference genbank file"/>
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16 <param name="number" type="integer" value="50" label="flanking region"/>
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3
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17 <param name="keys" type="text" label=" list of keys separated by comma of product names"/>
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1
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18 </inputs>
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19
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20
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21 <outputs>
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22 <data format="tabular" name="output_file" from_work_dir="output_file">
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23 </data>
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24
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25
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26 </outputs>
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27
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28 <tests>
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29 <!-- Empty -->
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30 </tests>
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31
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32 <help>
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33
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34 .. class:: infomark
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35
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36 **What it does**
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37
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3
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38
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39 Finds all CDS that match the key words provided in the comma separated argument -k in the product description adds a given number of bases on each side of the transcript for the exclusion set
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40
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2
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41
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1
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42 -------------
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43
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44 .. class:: infomark
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45
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46 **Tool Author**
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47
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48 Brigida Rusconi
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49
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50
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51 </help>
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52 </tool> |
