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comparison select_product.xml @ 3:342d303e5468 draft

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author brigidar
date Thu, 08 Oct 2015 16:00:08 -0400
parents 04128b8f7bc7
children f2506dfbc7f7
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2:04128b8f7bc7 3:342d303e5468
1 <tool id="select_product" name="select_product" version="0.2"> 1 <tool id="select_product" name="select_product" version="0.2">
2 <description>Finds all CDS that match the key words provided in the comma separated argument -k in the product description adds a given number of bases on each side of the transcript for the exclusion set</description> 2 <description>define product names to sort on and flanking region</description>
3 <requirements> 3 <requirements>
4 4
5 </requirements> 5 </requirements>
6 <command iterpreter="python"> 6 <command iterpreter="python">
7 select_product.py 7 select_product.py
12 </command> 12 </command>
13 13
14 <inputs> 14 <inputs>
15 <param format="gbk" name="input_file" type="data" label="reference genbank file"/> 15 <param format="gbk" name="input_file" type="data" label="reference genbank file"/>
16 <param name="number" type="integer" value="50" label="flanking region"/> 16 <param name="number" type="integer" value="50" label="flanking region"/>
17 <param name="keys" type="text" label=" list of keys separated by comma of product names"> 17 <param name="keys" type="text" label=" list of keys separated by comma of product names"/>
18 </inputs> 18 </inputs>
19 19
20 20
21 <outputs> 21 <outputs>
22 <data format="tabular" name="output_file" from_work_dir="output_file"> 22 <data format="tabular" name="output_file" from_work_dir="output_file">
33 33
34 .. class:: infomark 34 .. class:: infomark
35 35
36 **What it does** 36 **What it does**
37 37
38 wrapper for select product script 38
39 Finds all CDS that match the key words provided in the comma separated argument -k in the product description adds a given number of bases on each side of the transcript for the exclusion set
40
39 41
40 ------------- 42 -------------
41 43
42 .. class:: infomark 44 .. class:: infomark
43 45