Mercurial > repos > brigidar > select_product
comparison select_product.xml @ 1:c76d2a6bedee draft
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| author | brigidar |
|---|---|
| date | Thu, 08 Oct 2015 15:36:47 -0400 |
| parents | |
| children | 04128b8f7bc7 |
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| 0:6497d42015aa | 1:c76d2a6bedee |
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| 1 <tool id="select_product" name="select_product" version="0.1"> | |
| 2 <description>Finds all CDS that match the key words provided in the comma separated argument -k in the product description adds a given number of bases on each side of the transcript for the exclusion set</description> | |
| 3 <requirements> | |
| 4 | |
| 5 </requirements> | |
| 6 <command iterpreter="python"> | |
| 7 select_product.py | |
| 8 -g $input_file | |
| 9 -n $number | |
| 10 -k $keys | |
| 11 > output_file | |
| 12 </command> | |
| 13 | |
| 14 <inputs> | |
| 15 <param format="gbk" name="input_file" type="data" label="reference genbank file"/> | |
| 16 <param name="number" type="integer" value="50" label="flanking region"/> | |
| 17 <param name="keys" type="text" label=" list of keys separated by comma of product names"> | |
| 18 </inputs> | |
| 19 | |
| 20 | |
| 21 <outputs> | |
| 22 <data format="tabular" name="output_file" from_work_dir="output_file"> | |
| 23 </data> | |
| 24 | |
| 25 | |
| 26 </outputs> | |
| 27 | |
| 28 <tests> | |
| 29 <!-- Empty --> | |
| 30 </tests> | |
| 31 | |
| 32 <help> | |
| 33 | |
| 34 .. class:: infomark | |
| 35 | |
| 36 **What it does** | |
| 37 | |
| 38 wrapper for select product script | |
| 39 ------------- | |
| 40 | |
| 41 .. class:: infomark | |
| 42 | |
| 43 **Tool Author** | |
| 44 | |
| 45 Brigida Rusconi | |
| 46 | |
| 47 | |
| 48 </help> | |
| 49 </tool> |