Mercurial > repos > brinkmanlab > awkscript

comparison awkscript.xml @ 2:c6c81e6e1ca1 draft

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"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/awkscript commit 5c1b5fac50eb1e77d59c2df576e9b54b1b0a1b44"
author brinkmanlab
date Wed, 08 Jul 2020 17:54:33 -0400
parents 87c5033654a6
children ceac6ffb3865
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1:87c5033654a6 2:c6c81e6e1ca1
13 <requirement type="package" version="5.0.1">gawk</requirement> 13 <requirement type="package" version="5.0.1">gawk</requirement>
14 </requirements> 14 </requirements>
15 <version_command>awk --version | head -n 1</version_command> 15 <version_command>awk --version | head -n 1</version_command>
16 <command><![CDATA[ 16 <command><![CDATA[
17 #set $tool_input = 0 17 #set $tool_input = 0
18 env -i PATH=$PATH 18 env -i
19 #for env in $envs 19 #for env in $envs
20 '$env.name'='$env.val' 20 '$env.name'='$env.val'
21 #end for 21 #end for
22 awk 22 $(which awk)
23 --sandbox 23 --sandbox
24 -v FS=' ' 24 -v FS=' '
25 -v OFS=' ' 25 -v OFS=' '
26 -f '$awk_script' 26 -f '$awk_script'
27 #for group in $infiles 27 #for group in $infiles